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Possible column label mix-up and unexpected self-comparison distance in SKA2

Status: Open.

#96 In bacpop/ska.rust;

· taffners opened on May 22, 2025

suggestion: new input option for ska build (1 file containing n isolates)

Status: Open.

#94 In bacpop/ska.rust;

· rderelle opened on Apr 8, 2025

How to best call variants with ska lo?

Status: Open.

#93 In bacpop/ska.rust;

· rrwick opened on Mar 5, 2025

Possible run with k gretter than 63

enhancementNew feature or requestNew feature or request

not plannedThis will not be worked onThis will not be worked on

Status: Open.

#83 In bacpop/ska.rust;

· kebern opened on Oct 16, 2024

Possible faster bloom filter

Status: Open.

#78 In bacpop/ska.rust;

· johnlees opened on Aug 5, 2024

Possible changes to fastq input

enhancementNew feature or requestNew feature or request

Status: Open.

#52 In bacpop/ska.rust;

· johnlees opened on Aug 14, 2023

Feature requests: different mixture model; combined ska build & cov

enhancementNew feature or requestNew feature or request

Status: Open.

#50 In bacpop/ska.rust;

· rderelle opened on Jul 20, 2023

Alternatives for .skf format

enhancementNew feature or requestNew feature or request

Status: Open.

#47 In bacpop/ska.rust;

· johnlees opened on Jul 11, 2023

Add ambiguous genotypes in VCF output

enhancementNew feature or requestNew feature or request

not plannedThis will not be worked onThis will not be worked on

Status: Open.

#5 In bacpop/ska.rust;

· johnlees opened on Feb 7, 2023