work-in-progress: pydantic modelling of clin/phen concepts

[davidlougheed]

No description provided.

[codecov]

Codecov Report

❌ Patch coverage is 0.79576% with 374 lines in your changes missing coverage. Please review.
✅ Project coverage is 85.70%. Comparing base (6751f57) to head (e508b51).
⚠️ Report is 6 commits behind head on master.

Files with missing lines	Patch %	Lines
bento_lib/clinphen/phenopackets/interpretation.py	0.00%	58 Missing ⚠️
bento_lib/clinphen/phenopackets/medical_actions.py	0.00%	40 Missing ⚠️
bento_lib/clinphen/phenopackets/biosample.py	0.00%	34 Missing ⚠️
bento_lib/clinphen/phenopackets/measurement.py	0.00%	26 Missing ⚠️
bento_lib/clinphen/phenopackets/phenopacket.py	0.00%	22 Missing ⚠️
bento_lib/clinphen/phenopackets/meta_data.py	0.00%	20 Missing ⚠️
...ento_lib/clinphen/experiments/experiment_result.py	0.00%	19 Missing ⚠️
bento_lib/clinphen/phenopackets/individual.py	0.00%	18 Missing ⚠️
bento_lib/clinphen/phenopackets/disease.py	0.00%	15 Missing ⚠️
bento_lib/clinphen/geo/geo_location.py	0.00%	14 Missing ⚠️
... and 12 more

Additional details and impacted files

@@             Coverage Diff              @@
##            master     #324       +/-   ##
============================================
- Coverage   100.00%   85.70%   -14.30%     
============================================
  Files           74       96       +22     
  Lines         2240     2616      +376     
  Branches       211      211               
============================================
+ Hits          2240     2242        +2     
- Misses           0      374      +374     

Files with missing lines	Coverage Δ
bento_lib/utils/operators.py	100.00% <100.00%> (ø)
bento_lib/clinphen/phenopackets/file.py	0.00% <0.00%> (ø)
bento_lib/clinphen/phenopackets/time_interval.py	0.00% <0.00%> (ø)
bento_lib/clinphen/_fields.py	0.00% <0.00%> (ø)
...to_lib/clinphen/phenopackets/external_reference.py	0.00% <0.00%> (ø)
bento_lib/clinphen/phenopackets/evidence.py	0.00% <0.00%> (ø)
...to_lib/clinphen/phenopackets/phenotypic_feature.py	0.00% <0.00%> (ø)
bento_lib/clinphen/experiments/instrument.py	0.00% <0.00%> (ø)
bento_lib/clinphen/phenopackets/procedure.py	0.00% <0.00%> (ø)
bento_lib/clinphen/phenopackets/vital_status.py	0.00% <0.00%> (ø)
... and 13 more

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