My name is Clémence Frioux, welcome!
- 👩💻 I am a researcher in computational biology
- 📍 I work at Inria, a French research Institute on computer science and mathematics. I am located in Bordeaux, France
- 🧬 🦠 I am interested in the (functional) characterisation of microbial communities. I mostly work on metabolic modelling 🦠, but I also work on microbiome composition and metagenomics 🧬
- 😄 Pronouns: She/Her
- ➡️ More info on my website: [https://cfrioux.github.io]
I was not a developer in all of those projects but participated to them.
Evaluation of assembly and binning quality for Hi-Fi metagenomics.
A package for non-negative factorisation and its bi-cross validation.
Pipeline dedicated to the (optional) automatic reconstruction of genome-scale metabolic network and characterising the metabolic potential and metabolic complementarity in microbial communities.
Shiny-based interface to integrate results of Metage2Metabo together with sample and taxonomic metadata, in order to compare metabolic potential across large cohorts of samples.
Several tools relying on network expansion to explore metabolic networks.
Selection of minimal communities ensuring the reachability of target metabolites, using a collection of metabolic networks
Inference of seeds (environmental composition) from metabolic networks, using network expansion and flux balance analysis. Can be used for individual populations and microbial communities.
Gap-filling of metabolic networks.
Automatic reconstruction and comparison of metabolic networks.
Python wrapper for Pathway Tools (reconstruction of metabolic networks).