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Bisaloo committed Jan 27, 2025
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18 changes: 9 additions & 9 deletions Epidemiology.md
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Expand Up @@ -195,8 +195,8 @@ task view, which has a dedicated section on
cross-sectional surveys, and for calibrating tests for recent infection.
Implements and extends the method of
[Kassanjee et al. (2012)](https://doi.org/10.1097/EDE.0b013e3182576c07).
- `r pkg("epiCo")`: Tools for visualization and characterization of
vector-borne disease outbreaks, with a specific focus on the Colombian
- `r pkg("epiCo")`: Tools for visualization and characterization of
vector-borne disease outbreaks, with a specific focus on the Colombian
context.
- `r pkg("sivirep")`: Automated reports for the analysis of surveillance data
from the SIVIGILA (Sistema Nacional de Vigilancia en Salud Pública) in
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simulations.
- `r pkg("epiworldR")` and its Shiny interface `r pkg("epiworldRShiny")`: A
framework for agent-based modelling with a C++ backend for high performance.

#### Digital Epidemiology

- `r pkg("argo")`: Augmented Regression with General Online data (ARGO) for
Expand Down Expand Up @@ -408,11 +408,11 @@ task view, which has a dedicated section on

- `r pkg("vaccineff")`: Tools for estimating vaccine effectiveness and related
metrics.
- `r pkg("excessmort")`: Implementation of method for estimating excess
mortality and other health related outcomes from weekly or daily count data
described in [Acosta and Irizarry
- `r pkg("excessmort")`: Implementation of method for estimating excess
mortality and other health related outcomes from weekly or daily count data
described in [Acosta and Irizarry
(2021)](https://doi.org/10.1097/ede.0000000000001445).

### Plant epidemiology

- `r pkg("epiphy")`: A toolbox to analyze plant disease epidemics. It provides
Expand Down Expand Up @@ -674,8 +674,8 @@ COVID-19 section.
- `r pkg("epiparameter")` and `r pkg("epiparameterDB")`: a harmonized database
and standardized tools to manipulate published epidemiological parameters
(serial interval, generation time, etc.) for a number of diseases.
- `r pkg("hmsidwR")`: A collection of datasets and supporting functions
accompanying [Health Metrics and the Spread of Infectious Diseases by Federica
- `r pkg("hmsidwR")`: A collection of datasets and supporting functions
accompanying [Health Metrics and the Spread of Infectious Diseases by Federica
Gazzelloni (2024)](https://doi.org/10.5281%2Fzenodo.10818338).

## Links
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