fix: clarify agent-safe init guidance#121
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Warn agents not to run init -y or --yes unless the user explicitly asks to configure every detected tool. Document the staged verification path and cover the guidance in init tests.
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Summary
githits init -y/--yesunless the user requests all detected tools--detect-agents --jsoninstead of rerunning initTests
bun test src/commands/init/init.test.tsbun run typecheckbunx biome format src/commands/init/init.ts src/commands/init/init.test.ts docs/implementation/cli-commands.mdbun run smoke:cli(AUTH_REQUIRED: live CLI smoke skipped)