Issues · hdmf-dev/hdmf · GitHub

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HERD minor cleanups: dead assignment, repeated to_dataframe in loop, O(n^2) lookups

#1503

· rly opened

on Jun 23, 2026

HERD object lookup ignores the file: refs added under different files collapse onto one object and cross-contaminate entities

#1502

· rly opened

on Jun 23, 2026

HERD.get_object_entities(attribute=...) is asymmetric with add_ref(attribute=...) and fails for non-DataType attributes

#1501

· rly opened

on Jun 23, 2026

HERD._get_file_from_container returns None instead of raising when no ancestor is a HERDManager

#1499

· rly opened

on Jun 23, 2026

HERD.assert_external_resources_equal does not compare the entity_keys table

#1498

· rly opened

on Jun 23, 2026

Extend the LinkML reader to CSRMatrix (sparse.yaml)

#1493

· rly opened

on Jun 15, 2026

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Add Spec → LinkML → Spec round-trip tests (CSRMatrix / base.yaml)

#1491

· rly opened

on Jun 13, 2026

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Implement the Spec → LinkML writer (CSRMatrix / base.yaml)

#1490

· rly opened

on Jun 13, 2026

·

Implement the LinkML reader (base.yaml)

#1489

· rly opened

on Jun 13, 2026

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Translate base.yaml and CSRMatrix to LinkML

#1488

· rly opened

on Jun 13, 2026

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Define the initial HDMF → LinkML mapping conventions

#1487

· rly opened

on Jun 13, 2026

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Epic: Read and write LinkML schema for HDMF (CSRMatrix / base.yaml)

#1486

· rly opened

on Jun 13, 2026

·