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Fix integration test #82

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Merged
emays merged 1 commit into from
Jan 29, 2026
Merged

Fix integration test #82

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12 changes: 6 additions & 6 deletions ...ed-owl/src/test/java/dev/ikm/elk/snomed/owl/IncrementalClassifierCldUs20230301TestIT.java
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Original file line number Diff line number Diff line change
Expand Up @@ -101,13 +101,13 @@ public SnomedOwlOntology loadOntology() throws Exception {
return ontology;
}

private HashMap<Long, Set<Long>> getSuperClassMap(SnomedOwlOntology ontology) {
private MutableLongObjectMap<MutableLongSet> getSuperClassMap(SnomedOwlOntology ontology) {
HashMap<Long, Set<Long>> superConcepts = new HashMap<>();
for (OWLClass clazz : ontology.getOntology().getClassesInSignature()) {
long id = SnomedOwlOntology.getId(clazz);
superConcepts.put(id, ontology.getSuperClasses(id));
}
return superConcepts;
return convertToEclipseCollections(superConcepts);
}

private MutableLongObjectMap<MutableLongSet> convertToEclipseCollections(HashMap<Long, Set<Long>> map) {
Expand Down Expand Up @@ -139,8 +139,8 @@ private SnomedOwlOntology ontologyEquivalentClasses() throws Exception {
private SnomedIsa classifyEquivalentClasses() throws Exception {
SnomedOwlOntology ontology = ontologyEquivalentClasses();
ontology.classify();
HashMap<Long, Set<Long>> supers = getSuperClassMap(ontology);
return SnomedIsa.init(convertToEclipseCollections(supers));
MutableLongObjectMap<MutableLongSet> supers = getSuperClassMap(ontology);
return SnomedIsa.init(supers);
}

private void toSubClassOf(SnomedOwlOntology ontology) throws Exception {
Expand All @@ -162,8 +162,8 @@ private SnomedOwlOntology ontologySubClassOf() throws Exception {
private SnomedIsa classifySubClassOf() throws Exception {
SnomedOwlOntology ontology = ontologySubClassOf();
ontology.classify();
HashMap<Long, Set<Long>> supers = getSuperClassMap(ontology);
return SnomedIsa.init(convertToEclipseCollections(supers));
MutableLongObjectMap<MutableLongSet> supers = getSuperClassMap(ontology);
return SnomedIsa.init(supers);
}

@Test
Expand Down