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iqtree / iqtree3 Public

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Fork 29
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PMSR model implementation#40

Draft

StefanFlaumberg wants to merge 9 commits intoiqtree:masteriqtree/iqtree3:masterfrom

StefanFlaumberg:sitemodelStefanFlaumberg/iqtree3:sitemodelCopy head branch name to clipboard

Conversation Commits9 (9)Checks Files changed

Draft

PMSR model implementation#40
StefanFlaumberg wants to merge 9 commits intoiqtree:masterfrom
StefanFlaumberg:sitemodel

Commits

Commits on May 7, 2025

PMSR model implementation
StefanFlaumberg
committed
Fix ModelSet checkpointing
StefanFlaumberg
committed
Fix restrictions for --mlrate
StefanFlaumberg
committed
Add site-specific rate normalization and fix a BNNI bug
StefanFlaumberg
committed
Fix site-specific options and improve help
StefanFlaumberg
committed
Improve misc info output and compatibility checks
StefanFlaumberg
committed
Rewrite PhyloTree::computePatternRate and improve output
StefanFlaumberg
committed

Commits on May 19, 2025

Update PMSR model implementation to v3.0.1
StefanFlaumberg
committed
Suppress the repetitive NNI log message
StefanFlaumberg
committed

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