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INSTALLATION (Mar08) nfextern INSTALLATION (Mar08)
NFEXTERN: NEWFIRM/IR REDUCTION PACKAGE
Release Notes and Installation Instructions
SUMMARY
The NFEXTERN external package is a container package for tools useful
for basic instrumental calibration of NEWFIRM IR data and for image
segmentation and catalog. The packages in the container are NEWFIRM,
MSCTOOLS, and ACE. The NEWFIRM package has basic tools for NEWFIRM
reductions. The MSCTOOLS has general tools for handling MEF format
data such as NEWFIRM, and the ACE package provides tools for segmenting
images and making source catalogs.
RELEASE INFORMATION
The following summary only highlights the major changes. There will
also be minor changes and bug fixes. The version of a distribution may
be found with
cl> =nfextern.version
20080320
Version: V2.44: 20140623
Added a workaround for DS9 in msczero to eliminate the coordinate not
in an
image error. DS9 returns a WCS of [1-9]00 instead of
[1-9][0-9][1-9],[1-9][[1-9][0-9]. In particular, for frame 1 it
returns 100
instead of 101 or higher. To quickly fix this we check for a 00 and
increment it by 1.
Version:20111204
64-bit bug fixes for nfproc and ace. A logical bug fixed in nfwcs
Version:20111121
A few bug fixes to the ace package
Version:20110811
The file nfdat_ctio/nflincoeffs.fits was incorrect
Some minor bug fixes
Version: 20110524
Rename nfdat to nfdat_kpno
Added nfdat_ctio for CTIO data
The default definition for nfdat$ is nfdat_ctio
A few minor bug fixes
Version: 20090126
Added nfdat$bpm.
New task nfgroup.
New NEWFIRM package help pages.
Version: 20090115
Bug fix in the boundary setting of object masks in ace.
Version: 20090109
Internal version for SDM NEWFIRM Project testing.
Version: 20080320
Initial release of the NEWFIRM, MSCTOOLS, and ACE packages. This
version should be considered BETA level. Documentation is only
partially complete.
INSTALLATION INSTRUCTIONS
Installation of this external package consists of obtaining the files,
creating a directory containing the package, compiling the executables
or installing precompiled executables, and defining the environment to
load and run the package. The package may be installed for a site or
as a personal installation. If you need help with these installation
instructions contact Frank Valdes (valdes@noao.edu).
[arch]
In the following steps you will need to know the IRAF architecture
identifier for your IRAF installation. This identifier is similar
to the host operating system type. The identifiers are things like
"ssun" for Solaris, "linux" or "redhat" for most Linux systems, and
"macosx" or "macintel" for Mac systems. The IRAF architecture
identifier is defined when you run IRAF. Start the CL and then type
cl> show arch
.redhat
The value you need to know is without the leading '.'; i.e. the
IRAF architecture is "redhat" in the above example.
[1-site]
If you are installing the package for site use login as IRAF and
edit the IRAF file defining the packages.
% cd $hlib
Define the environment variable nfextern to be the pathnames to the
nfextern package root directory. Pathnames must be terminated with
a '/'. Edit extern.pkg to include the following.
reset nfextern = /local/nfextern/
task nfextern.pkg = nfextern$nfextern.cl
Near the end of the hlib$extern.pkg file, update the definition of
helpdb so it includes the nfextern help database, copying the syntax
already used in the string. Add this line before the line
containing a closing quote:
,nfextern$lib/helpdb.mip\
[1-personal]
If you are installing the package for personal use define a host
environment variable with the pathname of the directory where the
package will be located (needed in order to build the package from
the source code). Note that pathnames must end with '/'. For
example:
% export nfextern=/local/nfextern/
In your login.cl or loginuser.cl file make the following definitions
somewhere before the "keep" statement.
reset nfextern = /local/nfextern/
task nfextern.pkg = nfextern$nfextern.cl
printf ("reset helpdb=%s,nfextern$lib/helpdb.mip\nkeep\n",
envget("helpdb")) | cl
flpr
If you will be compiling the package, as opposed to installing a
binary distribution, then you need to define various environment
variables. The following is for Unix/csh which is the main
supported environment.
# Example
% export iraf=/iraf/iraf/ # Path to IRAF root (example)
% source $iraf/unix/hlib/irafuser.sh # Define rest of environment
% export IRAFARCH=linux # IRAF architecture
where you need to supply the appropriate path to the IRAF
installation root in the first step and the IRAF architecture
identifier for your machine in the last step.
[2] Login into IRAF. Create a directory to contain the package files.
This directory should be outside the standard IRAF directory tree.
cl> mkdir nfextern$
cl> cd nfextern
[3] The package is distributed as tar archives for the sources and, as
an optional convenience, a tar archive of the executables for
select host computers. The tar file(s) are most commonly obtained
via anonymous ftp. Below is an example.
cl> ftp iraf.noao.edu (140.252.1.1)
login: anonymous
password: [your email address]
ftp> cd iraf/extern
ftp> get nfextern.readme
ftp> binary
ftp> get nfextern-src.tgz
ftp> get nfextern-bin.<arch>.tgz (optional)
ftp> quit
cl> !uncompress nfextern-src
cl> !uncompress nfextern-bin.<arch> (optional)
The readme file contains these instructions. The <arch> in the
optional executable distribution is replaced by the IRAF
architecture identification for your computer.
[4] Extract the source files from the tar archive using the standard
"tar" utility (or possibly "rtar" which is distributed with IRAF).
% tar -xvf nfextern-src
On some systems, an error message will appear ("Copy 'bin.generic'
to './bin fails") which can be ignored. Sites should leave the
symbolic link 'bin' in the package root directory pointing to
'bin.generic' but can delete any of the bin.<arch> directories that
won't be used. If there is no binary directory for the system you
are installing it will be created when the package is compiled
later or when the binaries are installed.
If the binary executables have been obtained these are now extracted
into the appropriate bin.<arch> directory.
# Example of redhat installation.
% cd nfextern
% tar -xvf nfextern-bin.sparc # Creates bin.sparc directory
The various tar files can be deleted once they have been
successfully installed.
[5] For a source installation you now have to build the package
executable(s). First go to the package root directory with
cl> cd nfextern
If you are updating to a newer version and you earlier built the
libraries and executables it is necessary to delete these.
Otherwise, depending on the dates of files in the new version and
the locally built libraries, it may cause the new version to be
ignored. To do this the package is configured "generic" which puts
all the binary files in one binary directory, the files are deleted
and then you continue in the same way as a completely new
installation.
% mkpkg generic
% delete bin.<arch>/* # Substitute redhat, macox, ssun, etc.
Configure the package for the particular architecture to be built.
% mkpkg <arch> # Substitute sparc, ssun, alpha, etc.
This will change the bin link from bin.generic to bin.<arch>. The
binary directory will be created if not present. If an error
occurs in setting the architecture then you may need to add an
entry to the file "mkpkg". Just follow the examples in the file.
To create the executables and move them to the binary directory
% mkpkg -p nfextern # build executables
% mkpkg generic # optionally restore generic setting
Check for errors. If the executables are not moved to the binary
directory then step [1] to define the path for the package was not
done correctly. The last step restores the package to a generic
configuration. This is not necessary if you will only have one
architecture for the package.
This should complete the installation. You can now load the package
and begin testing and use.