Thrax 11 Publish thrax to Sonatype

[lewismc]

This PR is an attempt at Mavenizing Thrax with the attempt of having an artifact which can be pushed to Maven Central.
Essentially this PR does exactly that however it also does not correctly compile due to API changes within the most recent version of [jerboa|https://github.com/vandurme/jerboa/]. In particular the Classes which are affected are

edu.jhu.thrax.hadoop.distributional.CommonLSH
edu.jhu.thrax.hadoop.distributional.ContextWritable
edu.jhu.thrax.hadoop.distributional.DistributionalContextReducer

@mjpost can you take a look at the APi changes and potentially implement them correctly as i am not sure what is going on.

[mjpost]

@lewismc, we're pulling Thrax into Joshua as part of the multi-core move, so that will enable an easy Maven push (joshua-thrax). Sound okay to close this out?

[lewismc]

Sure does @mjpost that would have been my preference. Thanks @mjpost

[lewismc]

This build has been completely converted to Maven, slf4j-over-log4j has been implemented and all forbidden API's calls have been addressed however it is not ready to be merged into master yet as

1. No one has fully tested it yet, and
2. I get the following broken tests

Failed tests:   getLabel_NoConstCatCCG_returnDoubleCat(edu.jhu.thrax.extraction.SAMTLabelerTest): expected:<B+D+F> but was:<-11>
  getLabel_UnaryChain_Top(edu.jhu.thrax.extraction.SAMTLabelerTest): expected:<A> but was:<-2>
  getLabel_NoConst_returnCat(edu.jhu.thrax.extraction.SAMTLabelerTest): expected:<B+D> but was:<-10>
  getLabel_NoConstCat_returnCCG(edu.jhu.thrax.extraction.SAMTLabelerTest): expected:<A/D> but was:<-12>
  getLabel_UnaryChain_Bottom(edu.jhu.thrax.extraction.SAMTLabelerTest): expected:<B> but was:<-4>
  getLabel_UnaryChain_All(edu.jhu.thrax.extraction.SAMTLabelerTest): expected:<A:B> but was:<-13>
  numLeaves_Leaf_isOne(edu.jhu.thrax.syntax.ParseTreeTest): 0
  internalNodesWithSpan_Single(edu.jhu.thrax.syntax.ParseTreeTest): expected:<B> but was:<-2>
  internalNodesWithSpan_unaryChain(edu.jhu.thrax.syntax.ParseTreeTest): expected:<A> but was:<-1>
  leaf_ChildIterator_isEmpty(edu.jhu.thrax.syntax.ParseTreeTest): 0
  tree_ChildIterator(edu.jhu.thrax.syntax.ParseTreeTest): expected:<b> but was:<6>
  numNodes_Leaf_isOne(edu.jhu.thrax.syntax.ParseTreeTest): expected:<1> but was:<0>
  alignedSentencePair_simple(edu.jhu.thrax.util.io.InputUtilitiesTest): expected:<foo> but was:<1>
  getWords_PlainWords_ReturnsStringArray(edu.jhu.thrax.util.io.InputUtilitiesTest): expected:<[Ljava.lang.String;@60addb54> but was:<[I@3f2a3a5>
  parseYield_UnbalancedLeft_ThrowsException(edu.jhu.thrax.util.io.InputUtilitiesTest): (..)
  parseYield_UnbalancedRight_ThrowsException(edu.jhu.thrax.util.io.InputUtilitiesTest): (..)
  parseYield_Whitespace_ReturnsZeroLengthArray(edu.jhu.thrax.util.io.InputUtilitiesTest): malformed parse
  alignedSentencePair_reversed(edu.jhu.thrax.util.io.InputUtilitiesTest): expected:<bar> but was:<2>

Tests run: 47, Failures: 18, Errors: 0, Skipped: 0

[lewismc]

@mjpost is there work going on elsewhere to Mavenize Thrax? I jsut re-read your message above... which may indicate that the work has been completed elsewhere. I hope to god that this is not the case and this PR has and is time well spent.

[lewismc]

I'll wait for your reply here before continuing to investigate the tests.