232 functions used in formula= argument in defdata not available for functions defined out of global namespace #185
Workflow file for this run
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| name: Continuous Benchmarks (Receive) | |
| on: pull_request | |
| jobs: | |
| prepare: | |
| runs-on: ubuntu-latest | |
| outputs: | |
| config: ${{ steps.read_touchstone_config.outputs.config }} | |
| steps: | |
| - name: Checkout repo | |
| uses: actions/checkout@v2 | |
| with: | |
| fetch-depth: 0 | |
| - id: read_touchstone_config | |
| run: | | |
| content=`cat ./touchstone/config.json` | |
| # the following lines are only required for multi line json | |
| content="${content//'%'/'%25'}" | |
| content="${content//$'\n'/'%0A'}" | |
| content="${content//$'\r'/'%0D'}" | |
| # end of optional handling for multi line json | |
| echo "::set-output name=config::$content" | |
| build: | |
| needs: prepare | |
| runs-on: ${{ matrix.config.os }} | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| config: | |
| - ${{ fromJson(needs.prepare.outputs.config) }} | |
| env: | |
| R_REMOTES_NO_ERRORS_FROM_WARNINGS: true | |
| RSPM: ${{ matrix.config.rspm }} | |
| GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }} | |
| steps: | |
| - name: Checkout repo | |
| uses: actions/checkout@v2 | |
| with: | |
| fetch-depth: 0 | |
| - name: Set up git user | |
| run: | | |
| git config --local user.name "GitHub Actions" | |
| git config --local user.email "[email protected]" | |
| - name: Ensure base branch is fetched | |
| run: | | |
| git checkout -b $GITHUB_HEAD_REF # this is current ref. This is required for naming. | |
| git branch $GITHUB_BASE_REF remotes/origin/$GITHUB_BASE_REF | |
| - name: Setup R | |
| uses: r-lib/actions/setup-r@v2 | |
| - name: Setup dependencies | |
| uses: r-lib/actions/setup-r-dependencies@v2 | |
| with: | |
| cache-version: 1 | |
| extra-packages: | | |
| lorenzwalthert/touchstone | |
| ggplot2 | |
| dplyr | |
| gert | |
| - name: Remove global installation | |
| run: | | |
| pkg <- basename(getwd()) | |
| if (pkg %in% rownames(installed.packages())) { | |
| remove.packages(pkg) | |
| cat('removed package ', pkg, '.', sep = "") | |
| } | |
| shell: Rscript {0} | |
| - name: Checkout benchmarking repo | |
| if: ${{ matrix.config.benchmarking_repo != ''}} | |
| uses: actions/checkout@v2 | |
| with: | |
| repository: ${{ matrix.config.benchmarking_repo }} | |
| ref: ${{ matrix.config.benchmarking_ref }} | |
| path: ${{ matrix.config.benchmarking_path }} | |
| - name: Run benchmarks | |
| run: Rscript -e 'touchstone::run_script("touchstone/script.R")' | |
| - name: Save PR number | |
| run: | | |
| echo ${{ github.event.number }} > ./touchstone/pr-comment/NR | |
| - uses: actions/upload-artifact@v2 | |
| with: | |
| name: visual-benchmarks | |
| path: touchstone/plots/ | |
| - uses: actions/upload-artifact@v1 | |
| with: | |
| name: results | |
| path: touchstone/pr-comment | |
| - uses: actions/download-artifact@v1 | |
| with: | |
| name: results | |
| - name: comment PR | |
| run: cat touchstone/pr-comment/info.txt | |
| - uses: actions/upload-artifact@v2 | |
| with: | |
| name: pr | |
| path: touchstone/pr-comment/ |