Bump the pypi group across 1 directory with 2 updates

[dependabot]

Updates the requirements on zarr and apache-beam to permit the latest version.
Updates zarr to 3.0.2

Release notes

Sourced from zarr's releases.

v3.0.2

What's Changed

• doc: seed unreleased release notes by @​jhamman in zarr-developers/zarr-python#2728
• Add hatch command for html coverage report by @​maxrjones in zarr-developers/zarr-python#2721
• (fix): structured arrays for v2 by @​ilan-gold in zarr-developers/zarr-python#2681
• Use towncrier for changelog generation by @​dstansby in zarr-developers/zarr-python#2736
• Wrap sync fs for xarray.to_zarr by @​moradology in zarr-developers/zarr-python#2533
• Fix label action by @​dstansby in zarr-developers/zarr-python#2744
• Fix "needs release notes" labeler action by @​dstansby in zarr-developers/zarr-python#2759
• Fix pickling of ZipStore by @​dstansby in zarr-developers/zarr-python#2762
• Improve test coverage for storage classes by @​maxrjones in zarr-developers/zarr-python#2693
• Bump pypa/gh-action-pypi-publish from 1.12.3 to 1.12.4 in the actions group by @​dependabot in zarr-developers/zarr-python#2770
• Upload coverage after GPU tests by @​dstansby in zarr-developers/zarr-python#2767
• Make botocore an optional test dependency by @​dstansby in zarr-developers/zarr-python#2768
• Some release note improvements by @​dstansby in zarr-developers/zarr-python#2775
• Use ChunkKeyEncodingLike type alias by @​d-v-b in zarr-developers/zarr-python#2763
• add init_array, and data kwarg for create_array by @​d-v-b in zarr-developers/zarr-python#2761
• Optimize is_total_slice for chunksize == 1 by @​dcherian in zarr-developers/zarr-python#2782
• prepare changelog for 3.0.2 release by @​jhamman in zarr-developers/zarr-python#2783

New Contributors

• @​ilan-gold made their first contribution in zarr-developers/zarr-python#2681
• @​moradology made their first contribution in zarr-developers/zarr-python#2533

Full Changelog: zarr-developers/zarr-python@v3.0.1...v3.0.2

Changelog

Sourced from zarr's changelog.

3.0.2 (2025-01-31)

Features

- Test ``getsize()`` and ``getsize_prefix()`` in ``StoreTests``. (:issue:`2693`)
- Test that a ``ValueError`` is raised for invalid byte range syntax in ``StoreTests``. (:issue:`2693`)
- Separate instantiating and opening a store in ``StoreTests``. (:issue:`2693`)
- Add a test for using Stores as a context managers in ``StoreTests``. (:issue:`2693`)
- Implemented ``LogingStore.open()``. (:issue:`2693`)
- ``LoggingStore`` is now a generic class. (:issue:`2693`)
- Change StoreTest's ``test_store_repr``, ``test_store_supports_writes``,
  ``test_store_supports_partial_writes``, and ``test_store_supports_listing``
  to to be implemented using ``@abstractmethod``, rather raising ``NotImplementedError``. (:issue:`2693`)
- Test the error raised for invalid buffer arguments in ``StoreTests``. (:issue:`2693`)
- Test that data can be written to a store that's not yet open using the store.set method in ``StoreTests``. (:issue:`2693`)
- Adds a new function ``init_array`` for initializing an array in storage, and refactors ``create_array``
  to use ``init_array``. ``create_array`` takes two new parameters: ``data``, an optional array-like object, and ``write_data``, a bool which defaults to ``True``.
  If ``data`` is given to ``create_array``, then the ``dtype`` and ``shape`` attributes of ``data`` are used to define the
  corresponding attributes of the resulting Zarr array. Additionally, if ``data`` given and ``write_data`` is ``True``,
  then the values in ``data`` will be written to the newly created array. (:issue:`2761`)
Bugfixes

• Wrap sync fsspec filesystems with AsyncFileSystemWrapper. (:issue:2533)
• Added backwards compatibility for Zarr format 2 structured arrays. (:issue:2681)
• Update equality for LoggingStore and WrapperStore such that 'other' must also be a LoggingStore or WrapperStore respectively, rather than only checking the types of the stores they wrap. (:issue:2693)
• Ensure that ZipStore is open before getting or setting any values. (:issue:2693)
• Use stdout rather than stderr as the default stream for LoggingStore. (:issue:2693)
• Match the errors raised by read only stores in StoreTests. (:issue:2693)
• Fixed ZipStore to make sure the correct attributes are saved when instances are pickled. This fixes a previous bug that prevent using ZipStore with a ProcessPoolExecutor. (:issue:2762)
• Updated the optional test dependencies to include botocore and fsspec. (:issue:2768)
• Fixed the fsspec tests to skip if botocore is not installed. Previously they would have failed with an import error. (:issue:2768)
• Optimize full chunk writes. (:issue:2782)

Improved Documentation

- Changed the machinery for creating changelog entries.
  Now individual entries should be added as files to the `changes` directory in the `zarr-python` repository, instead of directly to the changelog file. (:issue:`2736`)
Other

</tr></table> 
</code></pre>
</blockquote>
<p>... (truncated)</p>
</details>
<details>
<summary>Commits</summary>
<ul>

<li><a href="https://github.com/zarr-developers/zarr-python/commit/cab29d21dd7ef88a2ccaab0749faa59db345c86e&quot;&gt;&lt;code&gt;cab29d2&lt;/code&gt;&lt;/a> prepare changelog for 3.0.2 release (<a href="https://redirect.github.com/zarr-developers/zarr-python/issues/2783&quot;&gt;#2783&lt;/a&gt;)&lt;/li>

<li><a href="https://github.com/zarr-developers/zarr-python/commit/15d92601d23458bc0fc278c17a90e1e18de09e5a&quot;&gt;&lt;code&gt;15d9260&lt;/code&gt;&lt;/a> Optimize is_total_slice for chunksize == 1 (<a href="https://redirect.github.com/zarr-developers/zarr-python/issues/2782&quot;&gt;#2782&lt;/a&gt;)&lt;/li>

<li><a href="https://github.com/zarr-developers/zarr-python/commit/fc08f31a0b4210c9d9b2071373c5ea7d55b66287&quot;&gt;&lt;code&gt;fc08f31&lt;/code&gt;&lt;/a> add init_array, and data kwarg for create_array (<a href="https://redirect.github.com/zarr-developers/zarr-python/issues/2761&quot;&gt;#2761&lt;/a&gt;)&lt;/li>

<li><a href="https://github.com/zarr-developers/zarr-python/commit/e602aa1d19f26bb06669994231e524c55bcecbeb&quot;&gt;&lt;code&gt;e602aa1&lt;/code&gt;&lt;/a> Use ChunkKeyEncodingLike type alias (<a href="https://redirect.github.com/zarr-developers/zarr-python/issues/2763&quot;&gt;#2763&lt;/a&gt;)&lt;/li>

<li><a href="https://github.com/zarr-developers/zarr-python/commit/0c895d18aa69b1d90866f2249e93986022ddc5e7&quot;&gt;&lt;code&gt;0c895d1&lt;/code&gt;&lt;/a> Some release note improvements (<a href="https://redirect.github.com/zarr-developers/zarr-python/issues/2775&quot;&gt;#2775&lt;/a&gt;)&lt;/li>

<li><a href="https://github.com/zarr-developers/zarr-python/commit/b5016c020ad5e2691b025506e490ad3abb0fa7c5&quot;&gt;&lt;code&gt;b5016c0&lt;/code&gt;&lt;/a> Make botocore an optional test dependency (<a href="https://redirect.github.com/zarr-developers/zarr-python/issues/2768&quot;&gt;#2768&lt;/a&gt;)&lt;/li>

<li><a href="https://github.com/zarr-developers/zarr-python/commit/fb37ff0942c7417a7767cc4d537de7173a9b3329&quot;&gt;&lt;code&gt;fb37ff0&lt;/code&gt;&lt;/a> Upload coverage after GPU tests (<a href="https://redirect.github.com/zarr-developers/zarr-python/issues/2767&quot;&gt;#2767&lt;/a&gt;)&lt;/li>

<li><a href="https://github.com/zarr-developers/zarr-python/commit/458299857141a5470ba3956d8a1607f52ac33857&quot;&gt;&lt;code&gt;4582998&lt;/code&gt;&lt;/a> Bump pypa/gh-action-pypi-publish from 1.12.3 to 1.12.4 in the actions group (...</li>

<li><a href="https://github.com/zarr-developers/zarr-python/commit/80aea2ae5af416de15d1e4b95c50f214ee0151e4&quot;&gt;&lt;code&gt;80aea2a&lt;/code&gt;&lt;/a> Improve test coverage for storage classes (<a href="https://redirect.github.com/zarr-developers/zarr-python/issues/2693&quot;&gt;#2693&lt;/a&gt;)&lt;/li>

<li><a href="https://github.com/zarr-developers/zarr-python/commit/9fd45451a9b4b0112b7dd9c180be5977d18570ac&quot;&gt;&lt;code&gt;9fd4545&lt;/code&gt;&lt;/a> Fix pickling of ZipStore (<a href="https://redirect.github.com/zarr-developers/zarr-python/issues/2762&quot;&gt;#2762&lt;/a&gt;)&lt;/li>

<li>Additional commits viewable in <a href="https://github.com/zarr-developers/zarr-python/compare/v0.0.0...v3.0.2&quot;&gt;compare view</a></li>

</ul>

</details>
<br />


Updates apache-beam from 2.60.0 to 2.62.0

Release notes
Sourced from apache-beam's releases.

Beam 2.62.0 release
We are happy to present the new 2.62.0 release of Beam.
This release includes both improvements and new functionality.
See the download page for this release.
For more information on changes in 2.62.0, check out the detailed release notes.
New Features / Improvements

Added support for stateful processing in Spark Runner for streaming pipelines. Timer functionality is not yet supported and will be implemented in a future release (#33237).
The datetime module is now available for use in jinja templatization for yaml.
Improved batch performance of SparkRunner's GroupByKey (#20943).
Support OnWindowExpiration in Prism (#32211).

This enables initial Java GroupIntoBatches support.


Support OrderedListState in Prism (#32929).

I/Os

gcs-connector config options can be set via GcsOptions (Java) (#32769).
[Managed Iceberg] Support partitioning by time (year, month, day, hour) for types date, time, timestamp, and timestamp(tz) (#32939)
Upgraded the default version of Hadoop dependencies to 3.4.1. Hadoop 2.10.2 is still supported (Java) (#33011).
[BigQueryIO] Create managed BigLake tables dynamically (#33125)

Breaking Changes

Upgraded ZetaSQL to 2024.11.1 (#32902). Java11+ is now needed if Beam's ZetaSQL component is used.

Bugfixes

Fixed EventTimeTimer ordering in Prism. (#32222).
[Managed Iceberg] Fixed a bug where DataFile metadata was assigned incorrect partition values (#33549).

Security Fixes

Fixed (CVE-2024-47561)[https://www.cve.org/CVERecord?id=CVE-2024-47561] (Java) by upgrading Avro version to 1.11.4

For the most up to date list of known issues, see https://github.com/apache/beam/blob/master/CHANGES.md
List of Contributors
According to git shortlog, the following people contributed to the 2.62.0 release. Thank you to all contributors!
Ahmed Abualsaud, Ahmet Altay, Alex Merose, Andrew Crites, Arnout Engelen, Attila Doroszlai, Bartosz Zablocki, Chamikara Jayalath, Claire McGinty, Claude van der Merwe, Damon Douglas, Danny McCormick, Gabija Balvociute, Hai Joey Tran, Hakampreet Singh Pandher, Ian Sullivan, Jack McCluskey, Jan Lukavský, Jeff Kinard, Jeffrey Kinard, Laura Detmer, Kenneth Knowles, Martin Trieu, Mattie Fu, Michel Davit, Naireen Hussain, Nick Anikin, Radosław Stankiewicz, Ravi Magham, Reeba Qureshi, Robert Bradshaw, Robert Burke, Rohit Sinha, S. Veyrié, Sam Whittle, Shingo Furuyama, Shunping Huang, Svetak Sundhar, Valentyn Tymofieiev, Vlado Djerek, XQ Hu, Yi Hu, twosom
Beam 2.61.0 release
We are happy to present the new 2.61.0 release of Beam.
This release includes both improvements and new functionality.



... (truncated)


Changelog
Sourced from apache-beam's changelog.

[2.62.0] - 2025-01-21
I/Os

gcs-connector config options can be set via GcsOptions (Java) (#32769).
[Managed Iceberg] Support partitioning by time (year, month, day, hour) for types date, time, timestamp, and timestamp(tz) (#32939)
Upgraded the default version of Hadoop dependencies to 3.4.1. Hadoop 2.10.2 is still supported (Java) (#33011).
[BigQueryIO] Create managed BigLake tables dynamically (#33125)

New Features / Improvements

Added support for stateful processing in Spark Runner for streaming pipelines. Timer functionality is not yet supported and will be implemented in a future release (#33237).
The datetime module is now available for use in jinja templatization for yaml.
Improved batch performance of SparkRunner's GroupByKey (#20943).
Support OnWindowExpiration in Prism (#32211).

This enables initial Java GroupIntoBatches support.


Support OrderedListState in Prism (#32929).
Add apache_beam.ml.rag package with RAG types, base chunking, LangChain chunking and HuggingFace embedding components (Python) (#33364).

Breaking Changes

Upgraded ZetaSQL to 2024.11.1 (#32902). Java11+ is now needed if Beam's ZetaSQL component is used.

Bugfixes

Fixed EventTimeTimer ordering in Prism. (#32222).
[Managed Iceberg] Fixed a bug where DataFile metadata was assigned incorrect partition values (#33549).

Security Fixes

Fixed (CVE-2024-47561)[https://www.cve.org/CVERecord?id=CVE-2024-47561] (Java) by upgrading Avro version to 1.11.4

Known Issues

[Python] If you are using the official Apache Beam Python containers for version 2.62.0, be aware that they include NumPy version 1.26.4. It is strongly recommended that you explicitly specify numpy==1.26.4 in your project's dependency list. (#33639).
[Dataflow Streaming Appliance] Commits fail with KeyCommitTooLargeException when a key outputs >180MB of results. Bug affects versions 2.60.0 to 2.62.0,

fix will be released with 2.63.0. #33588.
To resolve this issue, downgrade to 2.59.0 or upgrade to 2.63.0 or enable Streaming Engine.



[2.61.0] - 2024-11-25
Highlights

[Python] Introduce Managed Transforms API (#31495)
Flink 1.19 support added (#32648)

I/Os

[Managed Iceberg] Support creating tables if needed (#32686)
[Managed Iceberg] Now available in Python SDK (#31495)



... (truncated)


Commits

df0ad59 Set version for 2.62.0 RC1
77f38cd Cherrypick #33549 to Release 2.62.0 branch (Iceberg partition value race cond...
0c54e6a Merge pull request #33546: Cherry-pick #33505 to 2.62.0 release branch (Build...
1cc4b4c Build wheels on gha runners instead of local runners (#33505)
48e18c4 Merge pull request #33535: Cherry pick #33231 to 2.62.0 release branch ([BigQ...
eab8303 [BigQueryIO] fetch updated schema for newly created Storage API stream writer...
b2b2f14 Merge pull request #33486: Cherry-pick #33483 to release 2.62.0 (Fix bounded ...
88f1f3c Merge pull request #33479: [Release-2.62] cherry-pick #33472 into release bra...
e8cd8a6 Fix bounded trie merge when merging on empty trie
e72ad94 Make Beam expansion service shadowJar multi-release so it processes multi-rel...
Additional commits viewable in compare view




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