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1. VirStrain VirStrain Public

   An RNA virus strain-level identification tool for short reads.

   Python 21 1

2. StrainScan StrainScan Public

   High-resolution strain-level microbiome composition analysis tool based on reference genomes and k-mers

   Python 41 6

3. GDmicro GDmicro Public

   GDmicro - Use GCN and Deep adaptation network to classify host disease status based on human gut microbiome data.

   Python 9 2

4. AccuSNV AccuSNV Public

   High-accuracy SNV calling for bacterial isolates using deep learning

   Python

5. StrainAMR StrainAMR Public

   A learning-based tool to predict antimicrobial resistance and identify AMR-related genomic features from bacterial strain genomes

   Python

6. AnnoSINE_v2 AnnoSINE_v2 Public

   Forked from oushujun/AnnoSINE_v2

   Accelerating de novo SINE annotation in plant and animal genomes

   Python 2