Propagate changes made in autoconf by GiudGiud · Pull Request #4066 · libMesh/libmesh

GiudGiud · 2025-01-30T04:33:56Z

running bootstrap causes the many many changes in the second commit. But we do need to check some of those in for that other PR to have any effect?

moosebuild · 2025-01-30T08:09:46Z

Job Coverage, step Generate coverage on 1bd5dab wanted to post the following:

Coverage

Coverage did not change

Full coverage report

This comment will be updated on new commits.

jwpeterson · 2025-01-30T13:34:55Z

It looks like you are trying to commit a contrib/autotools/automake-1.16.5 directory, which doesn't look right to me. We distribute the contrib/autotools/automake-1.16.5.tar.gz tarball, which users are meant to install by running ./bootstrap --build-autotools before they subsequently run ./bootstrap (without arguments) to update the generated files in libmesh.

roystgnr · 2025-01-30T14:24:53Z

Yeah, this is unmergeable as-is, but I'm really glad you put it up here; I'd have hated to merge libMesh/autoconf-submodule#18 only to discover afterwards that we had to revert or fix it before we could bring it downstream without breaking a bunch of clang-on-Linux configurations.

GiudGiud · 2025-01-30T15:25:56Z

It looks like you are trying to commit a contrib/autotools/automake-1.16.5 directory, which doesn't look right to me.

should be fixed. Let's see what the test suite says of other changes

With the local automake I get this though

-- Check for working C compiler: /Users/giudgl/miniforge/envs/moose/bin/mpicc
-- Check for working C compiler: /Users/giudgl/miniforge/envs/moose/bin/mpicc - broken
CMake Error at /Users/giudgl/miniforge/envs/moose/share/cmake-3.28/Modules/CMakeTestCCompiler.cmake:67 (message):
  The C compiler

    "/Users/giudgl/miniforge/envs/moose/bin/mpicc"

roystgnr · 2025-01-30T15:44:09Z

Well that's interesting. It's not autotools failing directly this time, it's something failing in (presumably Netgen?) cmake?

Does cmake not give any more diagnostic output than "broken"??? I'm hoping you truncated some important console output, because I'm not seeing any cmake equivalent of config.log in my own build directories, and surely one of the most important pieces of software in the world has better error reporting than just "broken", right?!?

jwpeterson · 2025-01-30T15:47:41Z

 then :

-          is_intel_icc="`($CXX -V 2>&1) | grep 'Intel(R)' | grep 'Compiler' | grep -v 'oneAPI'`"
+          is_intel_icc="`($CXX -V 2>&1) | grep 'Intel(R)' | grep 'Compiler'`"


Are you working with an up-to-date version of the autoconf-submodule? Your diff is removing this grep statement that refers to oneAPI that was recently added; I don't think we want to do that.

should be it's all from a fresh clone

nope nevermind it was not

GiudGiud · 2025-01-30T18:03:40Z

ok even less changes now with up-to-date submodules

GiudGiud · 2025-01-30T18:11:32Z

Does cmake not give any more diagnostic output than "broken"???

error's gone now. I think I had the flags wrong

GiudGiud · 2025-01-30T19:08:03Z

Looks like our exception handling is less than optimal with these changes..

https://civet.inl.gov/job/2660603/

meshgenerators/mesh_diagnostics_generator.generate/negative_jacobian: libMesh terminatinglibMesh terminatinglibMesh terminatinglibMesh terminatinglibMesh terminatinglibMesh terminatinglibMesh terminatinglibMesh terminatinglibMesh terminatinglibMesh terminatinglibMesh terminatinglibMesh terminatinglibMesh terminatinglibMesh terminatinglibMesh terminatinglibMesh terminatinglibMesh terminatinglibMesh terminatinglibMesh terminatinglibMesh terminatinglibMesh terminatinglibMesh terminatinglibMesh terminatinglibMesh terminatinglibMesh terminatinglibMesh terminatinglibMesh terminatinglibMesh terminatinglibMesh terminatinglibMesh terminatinglibMesh terminatinglibMesh terminatinglibMesh terminatinglibMesh terminatinglibMesh terminatinglibMesh terminatinglibMesh terminatinglibMesh terminatinglibMesh terminatinglibMesh terminatinglibMesh terminatinglibMesh terminatinglibMesh terminatinglibMesh terminatinglibMesh terminatinglibMesh terminatinglibMesh terminatinglibMesh terminatinglibMesh 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terminatinglibMesh terminatinglibMesh terminatinglibMesh terminatinglibMesh terminatinglibMesh terminatinglibMesh terminatinglibMesh terminatinglibMesh terminatinglibMesh terminatinglibMesh terminatinglibMesh terminatinglibMesh terminatinglibMesh terminatinglibMesh terminatinglibMesh terminatinglibMesh terminatinglibMesh terminatinglibMesh terminatinglibMesh terminatinglibMesh terminatinglibMesh terminatinglibMesh terminatinglibMesh terminatinglibMesh terminatinglibMesh terminatinglibMesh terminatinglibMesh terminatinglibMesh terminatinglibMesh terminatinglibMesh terminatinglibMesh terminatinglibMesh terminatinglibMesh terminatinglibMesh terminatinglibMesh terminatinglibMesh terminatinglibMesh terminatinglibMesh terminatinglibMesh terminatinglibMesh terminatinglibMesh terminatinglibMesh terminatinglibMesh terminatinglibMesh terminatinglibMesh terminatinglibMesh terminatinglibMesh terminatinglibMesh terminatinglibMesh terminatinglibMesh terminatinglibMesh terminatinglibMesh 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terminatinglibMesh terminatinglibMesh terminatinglibMesh terminatinglibMesh terminatinglibMesh terminatinglibMesh terminatinglibMesh terminatinglibMesh terminatinglibMesh terminatinglibMesh terminatinglibMesh terminatinglibMesh terminatinglibMesh terminatinglibMesh terminatinglibMesh terminatinglibMesh terminatinglibMesh terminatinglibMesh terminatinglibMesh terminatinglibMesh terminatinglibMesh terminatinglibMesh terminatinglibMesh terminatinglibMesh terminatinglibMesh terminatinglibMesh terminatinglibMesh terminatinglibMesh terminatinglibMesh terminatinglibMesh terminatinglibMesh terminatinglibMesh terminatinglibMesh terminatinglibMesh terminatinglibMesh terminatinglibMesh terminatinglibMesh terminatinglibMesh terminatinglibMesh terminatinglibMesh terminatinglibMesh terminatinglibMesh terminatinglibMesh terminatinglibMesh terminatinglibMesh terminatinglibMesh terminatinglibMesh terminatinglibMesh terminatinglibMesh terminatinglibMesh terminatinglibMesh terminatinglibMesh 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terminatinglibMesh terminatinglibMesh terminatinglibMesh terminatinglibMesh terminatinglibMesh terminatinglibMesh terminatinglibMesh terminatinglibMesh terminatinglibMesh terminatinglibMesh terminatinglibMesh terminatinglibMesh terminatinglibMesh terminatinglibMesh terminatinglibMesh terminatinglibMesh terminatinglibMesh terminatinglibMesh terminatinglibMesh terminatinglibMesh terminatinglibMesh terminatinglibMesh terminatinglibMesh terminatinglibMesh terminatinglibMesh terminatinglibMesh terminatinglibMesh terminatinglibMesh terminatinglibMesh terminatinglibMesh terminatinglibMesh terminatinglibMesh terminatinglibMesh terminatinglibMesh terminatinglibMesh terminatinglibMesh terminatinglibMesh terminatinglibMesh terminatinglibMesh terminatinglibMesh terminatinglibMesh terminatinglibMesh terminatinglibMesh terminatinglibMesh terminatinglibMesh terminatinglibMesh terminatinglibMesh terminatinglibMesh terminatinglibMesh terminatinglibMesh terminatinglibMesh terminatinglibMesh terminatinglibMesh terminatinglibMesh terminatinglibMesh terminatinglibMesh terminatinglibMesh terminatinglibMesh terminatinglibMesh terminatinglibMesh terminatinglibMesh terminatinglibMesh terminatinglibMesh terminatinglibMesh terminatinglibMesh terminatinglibMesh terminatinglibMesh terminatinglibMesh terminatinglibMesh terminatinglibMesh terminatinglibMesh terminatinglibMesh terminatinglibMesh terminatinglibMesh terminatinglibMesh terminatinglibMesh terminatinglibMesh terminatinglibMesh terminatinglibMesh terminatinglibMesh terminatinglibMesh terminatinglibMesh terminatinglibMesh terminatinglibMesh terminatinglibMesh terminatinglibMesh terminatinglibMesh terminatinglibMesh terminatinglibMesh terminatinglibMesh terminatinglibMesh terminatinglibMesh terminatinglibMesh terminatinglibMesh terminatinglibMesh terminatinglibMesh terminatinglibMesh terminatinglibMesh terminatinglibMesh terminatinglibMesh terminatinglibMesh terminatinglibMesh terminatinglibMesh terminatinglibMesh terminatinglibMesh terminatinglibMesh terminatinglibMesh terminatinglibMesh terminatinglibMesh terminatinglibMesh terminatinglibMesh terminatinglibMesh terminatinglibMesh terminatinglibMesh terminatinglibMesh terminatinglibMesh terminatinglibMesh terminatinglibMesh terminatinglibMesh terminatinglibMesh terminatinglibMesh terminatinglibMesh terminatinglibMesh terminatinglibMesh terminatinglibMesh terminatinglibMesh terminatinglibMesh terminatinglibMesh terminatinglibMesh terminatinglibMesh terminatinglibMesh terminatinglibMesh terminatinglibMesh terminatinglibMesh terminatinglibMesh terminatinglibMesh terminatinglibMesh terminatinglibMesh terminatinglibMesh terminatinglibMesh terminatinglibMesh terminatinglibMesh terminatinglibMesh terminatinglibMesh terminatinglibMesh terminatinglibMesh terminatinglibMesh terminatinglibMesh terminatinglibMesh terminatinglibMesh terminatinglibMesh terminatinglibMesh terminatinglibMesh terminatinglibMesh terminatinglibMesh terminatinglibMesh 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terminatinglibMesh terminatinglibMesh terminatinglibMesh terminatinglibMesh terminatinglibMesh terminatinglibMesh terminatinglibMesh terminatinglibMesh terminatinglibMesh terminatinglibMesh terminatinglibMesh terminatinglibMesh terminatinglibMesh terminatinglibMesh terminatinglibMesh terminatinglibMesh terminatinglibMesh terminatinglibMesh terminatinglibMesh terminatinglibMesh terminatinglibMesh terminatinglibMesh terminatinglibMesh terminatinglibMesh terminatinglibMesh terminatinglibMesh terminatinglibMesh terminatinglibMesh terminatinglibMesh terminatinglibMesh terminatinglibMesh terminatinglibMesh terminatinglibMesh terminatinglibMesh terminatinglibMesh terminatinglibMesh terminatinglibMesh terminatinglibMesh terminatinglibMesh terminatinglibMesh terminatinglibMesh terminatinglibMesh terminatinglibMesh terminatinglibMesh terminatinglibMesh terminatinglibMesh terminatinglibMesh terminatinglibMesh terminatinglibMesh terminatinglibMesh terminatinglibMesh terminatinglibMesh terminatinglibMesh terminatinglibMesh terminatinglibMesh terminatinglibMesh terminatinglibMesh terminatinglibMesh terminatinglibMesh terminatinglibMesh terminatinglibMesh terminatinglibMesh terminatinglibMesh terminatinglibMesh terminatinglibMesh terminatinglibMesh terminatinglibMesh terminatinglibMesh terminatinglibMesh terminatinglibMesh terminatinglibMesh terminatinglibMesh terminatinglibMesh terminatinglibMesh terminatinglibMesh terminatinglibMesh terminatinglibMesh terminatinglibMesh terminatinglibMesh terminatinglibMesh terminatinglibMesh terminatinglibMesh terminatinglibMesh terminatinglibMesh terminatinglibMesh terminatinglibMesh terminatinglibMesh terminatinglibMesh terminatinglibMesh terminatinglibMesh terminatinglibMesh terminatinglibMesh terminatinglibMesh terminatinglibMesh terminatinglibMesh terminatinglibMesh terminatinglibMesh terminatinglibMesh terminatinglibMesh terminatinglibMesh terminatinglibMesh terminatinglibMesh terminatinglibMesh terminatinglibMesh terminatinglibMesh terminatinglibMesh terminatinglibMesh terminatinglibMesh terminatinglibMesh terminatinglibMesh terminatinglibMesh terminatinglibMesh terminatinglibMesh terminatinglibMesh terminatinglibMesh terminatinglibMesh terminatinglibMesh terminatinglibMesh terminatinglibMesh terminatinglibMesh terminatinglibMesh terminatinglibMesh terminatinglibMesh terminatinglibMesh terminatinglibMesh terminatinglibMesh terminatinglibMesh terminatinglibMesh terminatinglibMesh terminatinglibMesh terminatinglibMesh terminatinglibMesh terminatinglibMesh terminatinglibMesh terminatinglibMesh terminatinglibMesh terminatinglibMesh terminatinglibMesh terminatinglibMesh terminatinglibMesh terminatinglibMesh terminatinglibMesh terminatinglibMesh terminatinglibMesh terminatinglibMesh terminatinglibMesh terminatinglibMesh terminatinglibMesh terminatinglibMesh terminatinglibMesh terminatinglibMesh terminatinglibMesh terminatinglibMesh terminatinglibMesh terminatinglibMesh terminatinglibMesh terminatinglibMesh terminatinglibMesh terminatinglibMesh terminatinglibMesh terminatinglibMesh terminatinglibMesh terminatinglibMesh terminatinglibMesh terminatinglibMesh terminatinglibMesh terminatinglibMesh terminatinglibMesh terminatinglibMesh terminatinglibMesh terminatinglibMesh terminatinglibMesh terminatinglibMesh terminatinglibMesh terminatinglibMesh terminatinglibMesh terminatinglibMesh terminatinglibMesh terminatinglibMesh terminatinglibMesh terminatinglibMesh terminatinglibMesh terminatinglibMesh terminatinglibMesh terminatinglibMesh terminatinglibMesh terminatinglibMesh terminatinglibMesh terminatinglibMesh terminatinglibMesh terminatinglibMesh terminatinglibMesh terminatinglibMesh terminatinglibMesh terminatinglibMesh terminatinglibMesh terminatinglibMesh terminatinglibMesh terminatinglibMesh terminatinglibMesh terminatinglibMesh terminatinglibMesh terminatinglibMesh terminatinglibMesh terminatinglibMesh terminatinglibMesh terminatinglibMesh terminatinglibMesh terminatinglibMesh terminatinglibMesh terminatinglibMesh terminatinglibMesh terminatinglibMesh terminatinglibMesh terminatinglibMesh terminatinglibMesh terminatinglibMesh terminatinglibMesh terminatinglibMesh terminatinglibMesh terminatinglibMesh terminatinglibMesh terminatinglibMesh terminatinglibMesh terminatinglibMesh terminatinglibMesh terminatinglibMesh terminatinglibMesh terminatinglibMesh terminatinglibMesh terminatinglibMesh terminatinglibMesh terminatinglibMesh terminatinglibMesh terminatinglibMesh terminatinglibMesh terminatinglibMesh terminatinglibMesh terminatinglibMesh terminatinglibMesh terminatinglibMesh terminatinglibMesh terminatinglibMesh terminatinglibMesh terminatinglibMesh terminatinglibMesh terminatinglibMesh terminatinglibMesh terminatinglibMesh terminatinglibMesh terminatinglibMesh terminatinglibMesh terminatinglibMesh terminatinglibMesh terminatinglibMesh terminatinglibMesh terminatinglibMesh terminatinglibMesh terminatinglibMesh terminatinglibMesh terminatinglibMesh terminatinglibMesh terminatinglibMesh terminatinglibMesh terminatinglibMesh terminatinglibMesh terminatinglibMesh terminatinglibMesh terminatinglibMesh terminatinglibMesh terminatinglibMesh terminatinglibMesh terminatinglibMesh terminatinglibMesh terminatinglibMesh terminatinglibMesh terminatinglibMesh terminatinglibMesh terminatinglibMesh terminatinglibMesh terminatinglibMesh terminatinglibMesh terminatinglibMesh terminatinglibMesh terminatinglibMesh terminatinglibMesh terminatinglibMesh terminatinglibMesh terminatinglibMesh terminatinglibMesh terminatinglibMesh terminatinglibMesh terminatinglibMesh terminatinglibMesh terminatinglibMesh terminatinglibMesh terminatinglibMesh terminatinglibMesh terminatinglibMesh terminatinglibMesh terminatinglibMesh terminatinglibMesh terminatinglibMesh terminatinglibMesh terminatinglibMesh terminatinglibMesh terminatinglibMesh terminatinglibMesh terminatinglibMesh terminatinglibMesh terminatinglibMesh terminatinglibMesh terminatinglibMesh terminatinglibMesh terminatinglibMesh terminatinglibMesh terminatinglibMesh terminatinglibMesh terminatinglibMesh terminatinglibMesh terminatinglibMesh terminatinglibMesh terminatinglibMesh terminatinglibMesh terminatinglibMesh terminatinglibMesh terminatinglibMesh terminatinglibMesh terminatinglibMesh terminatinglibMesh terminatinglibMesh terminatinglibMesh terminatinglibMesh terminatinglibMesh terminatinglibMesh terminatinglibMesh terminatinglibMesh terminatinglibMesh terminatinglibMesh terminatinglibMesh terminatinglibMesh terminatinglibMesh terminatinglibMesh terminatinglibMesh terminatinglibMesh terminatinglibMesh terminatinglibMesh term

roystgnr · 2025-01-30T19:51:54Z

That seems exceptional to me!

GiudGiud · 2025-01-30T20:15:18Z

I'll see if I can improve this. I get a feeling the "emit dwarf unwind" flag is not obeyed
it's written differently here
https://clang.llvm.org/docs/ClangCommandLineReference.html

GiudGiud · 2025-01-31T01:20:51Z

ok it's not working in a number of ways.
Is MOOSE honoring LDFLAGS? or just 'libmesh_LDFLAGS' ?
and is LDFLAGS just saved as 'libmesh_LDFLAGS' essentially or do they not communicate?

roystgnr · 2025-02-03T18:36:08Z

Is MOOSE honoring LDFLAGS? or just 'libmesh_LDFLAGS' ?

I think MOOSE copies $libmesh_LDFLAGS into its $LDFLAGS via libmesh-config --ldflags, but I'd have to double-check to be sure.

We set AM_LDFLAGS = $(libmesh_LDFLAGS) in our Makefile.am for our own library code, and then automake puts that in $LDFLAGS when compiling, but IIRC it's overriding not appending.

Debateably $libmesh_FOO shouldn't ever have existed for these. IIRC it dates back decades, to some point when Derek was beset by a bunch of MOOSE users on systems where sysadmins or modules had some CFLAGS=--break-libmesh --and-moose options automatically set, and he thought that "make libMesh ignore environment settings unless the user does something like adding a prefix to indicate they're deliberate" was an easier solution than "teach all users one by one how to fix their environments' settings". He was probably right about that but I'm still not sure if making our build system forever even more confusing was worth it.

GiudGiud · 2025-02-04T01:02:27Z

but IIRC it's overriding not appending.

that might be why. I ll try adding to libmesh_LDFLAGS instead

Update auto-conf submodule

Bootstrap again

moosebuild · 2025-04-10T15:40:34Z

Job Test MOOSE ARM mac on 1bd5dab : invalidated by @GiudGiud

fluke or not?

GiudGiud · 2025-07-07T19:22:14Z

Closing this as there is a simple solution by aliasing make,.

The true solution would be for all linker warnings to have both a "turn on" and a "turn off" options, rather than what Clang does (turning on additional warnings from one version to the other without offering a turn off option)

GiudGiud force-pushed the PR_postboot branch from 64e342f to 3f382c4 Compare January 30, 2025 15:25

jwpeterson reviewed Jan 30, 2025

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GiudGiud force-pushed the PR_postboot branch from 3f382c4 to b1fc9ec Compare January 30, 2025 18:03

GiudGiud force-pushed the PR_postboot branch from b1fc9ec to 7688c46 Compare January 30, 2025 20:14

GiudGiud force-pushed the PR_postboot branch from 7688c46 to 3ceda62 Compare January 30, 2025 22:09

GiudGiud force-pushed the PR_postboot branch from 8c1f8dc to da40e1d Compare February 4, 2025 00:57

GiudGiud force-pushed the PR_postboot branch from da40e1d to 27543aa Compare February 4, 2025 01:04

GiudGiud added 3 commits April 2, 2025 12:11

Use clang-specific linking flags to suppress compact unwind warnings

915ba60

Update auto-conf submodule

Boostrap with changes in auto conf scripts

c745ac7

Update autoconf submodule

1bd5dab

Bootstrap again

GiudGiud force-pushed the PR_postboot branch from 27543aa to 1bd5dab Compare April 2, 2025 20:27

GiudGiud mentioned this pull request Apr 11, 2025

Use DWARF unwinding with Clang to avoid overproduction of linking warnings with clang + gfortran libMesh/autoconf-submodule#18

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GiudGiud closed this Jul 7, 2025

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