Multiomics-Analytics-Group repositories

30 repositories

vuegen
Public
VueGen automates the creation of reports from bioinformatics outputs, supporting formats like PDF, HTML, DOCX, ODT, PPTX, Reveal.js, Jupyter notebooks, and Stre…
python data-visualization reports
python data-visualization reports developer-tools quarto streamlit bioinformatics-software
Python
•
Other
•0•40•45•6•Updated Aug 26, 2026Aug 26, 2026
OrthoHPI2.0
Public
Jupyter Notebook
•
MIT License
•0•0•0•0•Updated Aug 26, 2026Aug 26, 2026
prefer_ontology
Public
A Precision Fermentation Ontology
Makefile
•
Creative Commons Attribution 4.0 International
•0•4•27•2•Updated Aug 25, 2026Aug 25, 2026
course_multi-omics_analysis
Public
Jupyter Notebook
•
Apache License 2.0
•0•0•0•0•Updated Aug 24, 2026Aug 24, 2026
gea
Public
Graph Explainable Attribution for decomposing GNNs embeddings using Sparse Autoencoders
Python
•
MIT License
•0•2•3•0•Updated Aug 20, 2026Aug 20, 2026
course_protein_language_modeling
Public
education machine-learning course
education machine-learning course slides protein-sequences
Jupyter Notebook
•
Apache License 2.0
•12•49•1•0•Updated Aug 20, 2026Aug 20, 2026
acore
Public
Python package to preprocess and analyse multi-omics data
analysis omics omics-data-integration
analysis omics omics-data-integration preprocessing-data
Python
•
Other
•1•4•20•3•Updated Aug 18, 2026Aug 18, 2026
vuecore
Public
Python package for creating interactive and static visualizations of multi-omics data
python data-visualization developer-tools
python data-visualization developer-tools plotting omics bioinformatics-software
Python
•
Other
•0•4•7•1•Updated Aug 18, 2026Aug 18, 2026
nf-vuegen
Public archive
nf-core module designed to automate report generation from outputs produced by other modules, subworkflows, or pipelines. VueGen creates reports from bioinforma…
data-visualization reports developer-tools
data-visualization reports developer-tools quarto nf-core streamlit nextflow-modules
Nextflow
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MIT License
•0•4•0•1•Updated Aug 11, 2026Aug 11, 2026
abaco
Public
Batch Effect Correction framework for metagenomic data
python metagenomics microbiome
python metagenomics microbiome batch-correction bioinformatics-software
Python
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Other
•0•4•3•0•Updated Aug 3, 2026Aug 3, 2026
InstaNexus
Public
Python
•
MIT License
•3•1•0•0•Updated Jul 15, 2026Jul 15, 2026
course_graph_machine_learning
Public
This is part of an AI course
Jupyter Notebook
•
GNU General Public License v3.0
•3•3•0•0•Updated Jun 12, 2026Jun 12, 2026
FermentDB
Public
FermentDB: A Database for High-cell Density Fermentations
Python
•
GNU General Public License v3.0
•0•1•0•0•Updated Apr 13, 2026Apr 13, 2026
MicW2Graph
Public
A knowledge graph of the wastewater treatment microbiome and its biological context
metagenomics knowledge-graph network-biology
metagenomics knowledge-graph network-biology wastewater-treatment biolink-model streamlit-webapp
HTML
•
MIT License
•0•6•0•0•Updated Mar 5, 2026Mar 5, 2026
networks_to_study_microbes
Public
education course slides
education course slides notebooks-jupyter
Jupyter Notebook
•1•1•0•0•Updated Nov 18, 2025Nov 18, 2025
course_multi-omics_data_science
Public
Jupyter Notebook
•1•4•0•0•Updated Nov 14, 2025Nov 14, 2025
streamlit_demo
Public
Streamlit demo for the MONA group meeting on the 2nd of November 2025
Python
•
GNU General Public License v3.0
•0•0•0•1•Updated Oct 2, 2025Oct 2, 2025
multiomics-analytics-group.github.io
Public
MoNA Group Website
HTML
•
Other
•4k•1•0•1•Updated Sep 26, 2025Sep 26, 2025
airbiome_microb_asso_net_report
Public
This repository contains a summary of the main results for the microbial association networks from the AirBiome project. The reports were generated using VueGe…
HTML
•0•0•0•0•Updated Aug 19, 2025Aug 19, 2025
airbiome
Public
R and Python scripts to perform microbial network analysis of the AirBiome project, from data preprocessing to network comparisons and metadata correlations.
python bioinformatics r
python bioinformatics r network-analysis metagenomics-analysis
Jupyter Notebook
•0•0•0•0•Updated Aug 18, 2025Aug 18, 2025
Retrieve_info_MGnifyAPI
Public
Scripts to get information from MGnify programmatically using its API
Jupyter Notebook
•0•0•1•1•Updated Jul 25, 2025Jul 25, 2025
pubmed-rag
Public
A playground for RAG development from pubmed API
Jupyter Notebook
•
MIT License
•2•5•0•0•Updated Jul 15, 2025Jul 15, 2025
course_synthetic_biology_data
Public
Slides for lecture "Leveraging existing biological data and making sense of it" part of DTU's Summer School on Synthetic Biology for Cell Factories
education course slides
education course slides
Apache License 2.0
•0•3•0•0•Updated Jun 17, 2025Jun 17, 2025
MetaProteomics
Public
Josefine's repo for special course on meta-proteomics
Python
•
MIT License
•0•2•0•0•Updated Jun 4, 2025Jun 4, 2025
ckg
Public
Clinical Knowledge Graph (CKG) is a platform with twofold objective: 1) build a graph database with experimental data and data imported from diverse biomedical …
Jupyter Notebook
•
MIT License
•126•1•0•0•Updated Jan 21, 2025Jan 21, 2025
MicW2Graph_network_inference_analysis
Public
A repository with scripts to infer and analyze microbial association networks for the MicW2Graph project
Python
•
MIT License
•1•0•0•0•Updated Jun 4, 2024Jun 4, 2024
cfb_data_club
Public
0•0•0•0•Updated May 10, 2023May 10, 2023
orthohpi
Public
JavaScript
•
MIT License
•0•0•0•0•Updated Aug 6, 2021Aug 6, 2021
PythonTsunami
Public
education course slides
education course slides notebook-jupyter
Jupyter Notebook
•
MIT License
•17•1•0•0•Updated Jun 9, 2021Jun 9, 2021
triqler
Public
The triqler (TRansparent Identification-Quantification-linked Error Rates)'s source and example code
Python
•
Apache License 2.0
•12•0•0•0•Updated May 4, 2020May 4, 2020

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Multi-omics Network Analytics Group

All

30 repositories

vuegen

OrthoHPI2.0

prefer_ontology

course_multi-omics_analysis

gea

course_protein_language_modeling

acore

vuecore

nf-vuegen

abaco

InstaNexus

course_graph_machine_learning

FermentDB

MicW2Graph

networks_to_study_microbes

course_multi-omics_data_science

streamlit_demo

multiomics-analytics-group.github.io

airbiome_microb_asso_net_report

airbiome

Retrieve_info_MGnifyAPI

pubmed-rag

course_synthetic_biology_data

MetaProteomics

ckg

MicW2Graph_network_inference_analysis

cfb_data_club

orthohpi

PythonTsunami

triqler

Repositories list

30 repositories