Repositories list

• training-resources

  Public
  Resources for teaching/preparing to teach bioimage analysis

  JavaScript

  •

  Other

  •3131 forks•6464 stars•299299 issues•77 pull requests•Updated Aug 20, 2026Aug 20, 2026

• bise

  Public
  BIII development repository

  SCSS

  •

  GNU General Public License v2.0

  •1515 forks•66 stars•4545 issues•77 pull requests•Updated May 28, 2026May 28, 2026

• Defragmentation_TS2_EOSC-Life_2023

  Public
  "Defragmentation TS2: bringing BioImage Analysts to the cloud!” training school for the new generation of bioimage analysts. Topics: workflow-based image analys…

  BSD 2-Clause "Simplified" License

  •22 forks•1010 stars•00 issues•00 pull requests•Updated Jun 6, 2023Jun 6, 2023

• bise-documents

  Public
  This directry host documents under construction, which aims to be then inserted either in BISE itself, either on the wiki

  GNU General Public License v3.0

  •22 forks•22 stars•22 issues•00 pull requests•Updated May 25, 2023May 25, 2023

• Defragmentation_TrainingSchool_EOSC-Life_2022

  Public
  "Defragmentation: bringing BioImage Analysts to the cloud!” training school for the new generation of bioimage analysts. Topics: workflow-based image analysis a…

  BSD 2-Clause "Simplified" License

  •33 forks•1515 stars•00 issues•00 pull requests•Updated Apr 30, 2023Apr 30, 2023

• bise-core-ontology

  Public
  Jupyter Notebook

  •22 forks•33 stars•33 issues•00 pull requests•Updated Mar 2, 2023Mar 2, 2023

• bioimage-analysis-training-standards

  Public
  00 forks•1010 stars•1212 issues•00 pull requests•Updated Feb 13, 2023Feb 13, 2023

• neubias-springer-book-2021

  Public
  The repository of NEUBIAS textbook 2021

  Jupyter Notebook

  •88 forks•1010 stars•00 issues•00 pull requests•Updated Jan 24, 2022Jan 24, 2022

• neubias_reproducible_software

  Public
  Table(s) and information about the degree and type of reproducibility supported by various bioimage analysis software

  11 fork•22 stars•00 issues•00 pull requests•Updated Apr 24, 2021Apr 24, 2021

• neubias-springer-book-2020

  Public
  Code and images for the Springer book: Bioimage Data Analysis Workflows, edited by Kota Miura and Nataša Sladoje

  MATLAB

  •22 forks•99 stars•00 issues•00 pull requests•Updated Aug 20, 2020Aug 20, 2020

• neubias_academy_stardist

  Public
  Jupyter Notebook

  •1414 forks•00 stars•00 issues•00 pull requests•Updated Apr 28, 2020Apr 28, 2020

• NEUBIAS_AnalystSchool2020

  Public
  Jupyter Notebook

  •1818 forks•11 star•00 issues•00 pull requests•Updated Mar 23, 2020Mar 23, 2020

• database-migration

  Public
  Python

  •11 fork•22 stars•11 issue•00 pull requests•Updated Oct 16, 2019Oct 16, 2019

• neubias-ts13-imagej2-scripting

  Public
  Scripts for the ImageJ2 / ImgLib2 Scripting session at NEUBIAS TS13

  11 fork•00 stars•00 issues•00 pull requests•Updated Oct 15, 2019Oct 15, 2019

• neubias-ts13-git-intro

  Public
  An example git repository

  The Unlicense

  •22 forks•11 star•00 issues•00 pull requests•Updated Oct 14, 2019Oct 14, 2019

• neubias.github.io

  Public
  The NeuBIAS Blog

  HTML

  •00 forks•33 stars•55 issues•00 pull requests•Updated Oct 19, 2018Oct 19, 2018

• neubias-ijsearch

  Public
  Simple shortcut to BIII website added to Fiji

  Java

  •22 forks•11 star•00 issues•00 pull requests•Updated Sep 25, 2018Sep 25, 2018

• neubias-web

  Public
  PHP

  •00 forks•00 stars•00 issues•00 pull requests•Updated Jun 8, 2017Jun 8, 2017

• neubias-toolbox

  Public
  00 forks•00 stars•00 issues•00 pull requests•Updated Dec 16, 2016Dec 16, 2016