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@PennLINC Lifespan Informatics and Neuroimaging Center

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    226 repositories

    • Meisler_ABCD_dMRI

      Public
      Code and Data Associated with the Meisler et al. Analysis of ABCD DWI (ABCC Release 3.1.0)
      Jupyter Notebook
      •
      MIT License
      •0•0•0•0•Updated Jul 20, 2026Jul 20, 2026

    • bdt

      Public
      BIDS Derivatives Transformer
      Python
      •
      Apache License 2.0
      •0•0•8•1•Updated Jul 20, 2026Jul 20, 2026

    • sypres-docs

      Public
      Analysis and documentation repo for SYPRES.
      JavaScript
      •
      MIT License
      •0•1•2•7•Updated Jul 19, 2026Jul 19, 2026

    • odx-rs

      Public
      Rust
      •
      Apache License 2.0
      •0•1•0•0•Updated Jul 17, 2026Jul 17, 2026

    • grmpy_opendata

      Public
      Jupyter Notebook
      •
      MIT License
      •0•0•0•0•Updated Jul 17, 2026Jul 17, 2026

    • qsirecon

      Public
      Reconstruction of preprocessed q-space images (dMRI)
      mribidsdwi
      mribidsdwidiffusion-mribids-formatdmribidsappbids-apps
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •17•23•78•6•Updated Jul 16, 2026Jul 16, 2026

    • babs

      Public
      BIDS App Bootstrap (BABS)
      Python
      •
      MIT License
      •8•12•53•7•Updated Jul 16, 2026Jul 16, 2026

    • transdiagnostic_executive_function

      Public
      Data resource that combines longitudinal multi-modal imaging data with rich clinical and cognitive phenotyping
      Jupyter Notebook
      •
      MIT License
      •0•0•0•0•Updated Jul 16, 2026Jul 16, 2026

    • dipy

      Public
      DIPY is the paragon 3D/4D+ imaging library in Python. Contains generic methods for spatial normalization, signal processing, machine learning, statistical analy…
      Python
      •
      Other
      •503•0•0•0•Updated Jul 15, 2026Jul 15, 2026

    • qsiprep

      Public
      Preprocessing of diffusion MRI
      pipelinesdistortion-correctionbids
      pipelinesdistortion-correctionbidsmotion-correctiondiffusion-mridenoising-images
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •64•185•94•14•Updated Jul 14, 2026Jul 14, 2026

    • ModelArrayIO

      Public
      Companion converter software for ModelArray for converting data back and forth from the HDF5 file format.
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •0•0•11•7•Updated Jul 14, 2026Jul 14, 2026

    • xcp_d

      Public
      Post-processing of fMRIPrep, NiBabies, and HCP outputs
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •38•116•42•9•Updated Jul 13, 2026Jul 13, 2026

    • AI2D

      Public
      Website showcasing AI2D datasets
      Jupyter Notebook
      •
      MIT License
      •0•0•0•0•Updated Jul 9, 2026Jul 9, 2026

    • aslprep

      Public
      Preprocessing of arterial spin labeling (ASL) data
      aslcbfbids-apps
      aslcbfbids-apps
      Python
      •
      Other
      •21•63•46•9•Updated Jul 1, 2026Jul 1, 2026

    • uFixels

      Public
      Try to find superficial white matter-related fixels
      Rust
      •
      Apache License 2.0
      •0•0•0•0•Updated Jun 30, 2026Jun 30, 2026

    • odx-tractography

      Public
      tractography on ODX files
      Rust
      •
      Apache License 2.0
      •0•0•0•0•Updated Jun 29, 2026Jun 29, 2026

    • nibs

      Public
      Myelin mapping test-retest study
      Python
      •
      MIT License
      •0•2•0•0•Updated Jun 25, 2026Jun 25, 2026

    • affective-instability

      Public
      Curation and analysis code for the Affective Instability (PAFIN) dataset.
      HTML
      •
      MIT License
      •0•1•0•0•Updated Jun 22, 2026Jun 22, 2026

    • CuBIDS

      Public
      Curation of BIDS (CuBIDS): A sanity-preserving software package for processing BIDS datasets.
      neuroscienceneuroimagingneuroinformatics
      neuroscienceneuroimagingneuroinformaticspython-packagedata-curationneuroscience-methodsneuroimaging-data-sciencedata-organization
      Python
      •
      MIT License
      •13•31•46•11•Updated Jun 22, 2026Jun 22, 2026

    • mebold-trt

      Public
      Code for curating and processing the MEBOLD-TRT dataset.
      Python
      •
      MIT License
      •0•0•1•0•Updated May 15, 2026May 15, 2026

    • tractmaps

      Public
      Python
      •
      MIT License
      •0•0•0•0•Updated May 14, 2026May 14, 2026

    • PennLINC.github.io

      Public
      Documentation for PennLINC
      HTML
      •
      MIT License
      •17•5•17•0•Updated May 11, 2026May 11, 2026

    • gifti-rs

      Public
      Rust library for the Gifti format
      Rust
      •
      Apache License 2.0
      •0•0•1•0•Updated May 7, 2026May 7, 2026

    • itk-transforms-rs

      Public
      Rust
      •
      Apache License 2.0
      •0•0•0•0•Updated May 7, 2026May 7, 2026

    • pymp2rage

      Public
      Lightweight Python package to process MP2RAGE and ME-MP2RAGE-data
      Jupyter Notebook
      •
      Other
      •16•0•0•0•Updated May 6, 2026May 6, 2026

    • sepia

      Public
      Matlab GUI pipeline application for quantitative susceptibility mapping (QSM)
      MATLAB
      •
      MIT License
      •18•1•0•0•Updated May 4, 2026May 4, 2026

    • ModelArray

      Public
      ModelArray: an R package for statistical analysis of fixel-wise data and beyond
      rbig-datastatistical-analysis
      rbig-datastatistical-analysisneuroimaging
      R
      •
      Other
      •4•7•29•3•Updated May 1, 2026May 1, 2026

    • niwrap

      Public
      Modern Neuroimaging Made Simple
      Python
      •11•0•0•0•Updated May 1, 2026May 1, 2026

    • macedo_wm_exposome

      Public
      We investigated how the childhood exposome, a multidimensional measure capturing total environmental exposures across the lifespan, relates to white matter shap…
      Jupyter Notebook
      •
      MIT License
      •0•0•0•0•Updated Apr 28, 2026Apr 28, 2026

    • niiterm

      Public
      Rust
      •
      BSD 3-Clause "New" or "Revised" License
      •0•0•0•0•Updated Apr 24, 2026Apr 24, 2026
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