All

14 repositories

vquest
Public
Automate IMGT V-QUEST usage on imgt.org
bioinformatics immunology imgt
bioinformatics immunology imgt
Python
•
GNU Affero General Public License v3.0
•6•15•3•0•Updated Jun 13, 2026Jun 13, 2026
igseqhelper
Public
Antibody analysis umbrella package
snakemake immunology
snakemake immunology
Python
•0•0•0•0•Updated Jun 12, 2026Jun 12, 2026
igseq
Public
IgSeq utilities
bioinformatics immunology
bioinformatics immunology
Python
•1•1•4•0•Updated Apr 25, 2026Apr 25, 2026
chiimp
Public
Computational, High-throughput Individual Identification through Microsatellite Profiling
r-package tandem-repeats microsatellites
r-package tandem-repeats microsatellites short-tandem-repeats
R
•
GNU Affero General Public License v3.0
•3•2•9•1•Updated Feb 12, 2026Feb 12, 2026
Habib_et_al_2025_HammingDistance
Public
Script to identify regions of differential selection across the HIV or SHIV envelope gene in longitudinal single genome sequencing data.
R
•
MIT License
•0•0•0•0•Updated Jan 21, 2026Jan 21, 2026
Habib_et_al_2025_igseq
Public
Analysis workflow for lineage tracing rhesus macaque antibody data for Habib et al. 2025.
Python
•0•0•0•0•Updated Sep 25, 2025Sep 25, 2025
ARMADiLLO
Public
C++
•
Other
•1•0•0•0•Updated Sep 18, 2025Sep 18, 2025
umbra
Public
Python package and executable for Linux for managing Illumina sequencing runs
bioinformatics sequencing illumina
bioinformatics sequencing illumina
Python
•
GNU Affero General Public License v3.0
•0•3•12•0•Updated Sep 18, 2025Sep 18, 2025
partis
Public
B- and T-cell receptor sequence annotation, simulation, clonal family and germline inference, and affinity prediction
C++
•
GNU General Public License v3.0
•33•0•0•0•Updated Aug 20, 2024Aug 20, 2024
MINING-D
Public
A tool for de novo inference of D genes from immunosequencing data in diverse species
Python
•1•0•0•0•Updated Jul 25, 2024Jul 25, 2024
SONAR
Public
Software for Ontogenic aNalysis of Antibody Repertoires
Python
•
GNU General Public License v3.0
•9•0•0•0•Updated Apr 13, 2024Apr 13, 2024
chiimp-paper
Public
Supporting code for the microsatellite genotyping paper introducing CHIIMP
reproducible-research tandem-repeats microsatellites
reproducible-research tandem-repeats microsatellites short-tandem-repeats
Makefile
•1•1•0•0•Updated Feb 1, 2021Feb 1, 2021
lassie
Public
Select sites and sequences from a serially sampled alignment
Python
•
Other
•3•0•0•0•Updated Apr 10, 2019Apr 10, 2019
genbank-sub-20181109-dloop
Public
GenBank Submission 2018/11/09
genbank ncbi
genbank ncbi
Python
•0•1•0•0•Updated Nov 21, 2018Nov 21, 2018

ProTip! When viewing an organization's repositories, you can use the props. filter to filter by custom property.

Provide feedback

Saved searches

Use saved searches to filter your results more quickly

ShawHahnLab

All

All

14 repositories

vquest

igseqhelper

igseq

chiimp

Habib_et_al_2025_HammingDistance

Habib_et_al_2025_igseq

ARMADiLLO

umbra

partis

MINING-D

SONAR

chiimp-paper

lassie

genbank-sub-20181109-dloop

All

All

Repositories list

14 repositories