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    115 repositories

    • Broadsea

      Public
      Broadsea deploys the core OHDSI technology stack (Atlas & R Hades), using cross-platform Docker container technology.
      Shell
      •
      Apache License 2.0
      •79•0•0•0•Updated Jul 30, 2026Jul 30, 2026

    • EGME

      Public
      HTML
      •0•1•0•0•Updated Jun 11, 2026Jun 11, 2026

    • workflows_workshop

      Public
      Jupyter Notebook
      •0•0•0•0•Updated Jun 4, 2026Jun 4, 2026

    • ccv_bootcamp_fnds_bioinformatics_analysis

      Public
      HTML
      •
      GNU General Public License v3.0
      •1•0•0•0•Updated Jun 4, 2026Jun 4, 2026

    • workflows_on_OSCAR

      Public
      Python
      •0•0•5•0•Updated Jun 4, 2026Jun 4, 2026

    • ccv_bootcamp_R

      Public
      Dockerfile
      •2•1•4•1•Updated Jun 3, 2026Jun 3, 2026

    • singlecell_python_workshop

      Public
      Jupyter Notebook
      •
      MIT License
      •0•0•0•0•Updated Jun 2, 2026Jun 2, 2026

    • Ares

      Public
      A Research Exploration System
      Vue
      •
      Apache License 2.0
      •9•0•0•0•Updated Apr 14, 2026Apr 14, 2026

    • chordoma_rna_example

      Public
      HTML
      •0•0•0•0•Updated Mar 30, 2026Mar 30, 2026

    • dennery_singlecell_reanalysis

      Public
      Dockerfile
      •
      MIT License
      •0•0•1•0•Updated Mar 19, 2026Mar 19, 2026

    • access_genbank

      Public
      Python
      •0•0•1•1•Updated Dec 4, 2025Dec 4, 2025

    • skills-expand-your-team-with-copilot

      Public
      Exercise: Expand your team with GitHub Copilot coding agent
      JavaScript
      •
      MIT License
      •0•0•1•0•Updated Dec 2, 2025Dec 2, 2025

    • cbc_colabfold

      Public
      Jupyter Notebook
      •0•0•0•0•Updated Nov 19, 2025Nov 19, 2025

    • intro_scrna_dscov

      Public
      An Introduction to Single Cell RNAseq with Seurat. This session will give an introduction to analysis of single cell RNAseq data using R and Seurat.
      HTML
      •
      MIT License
      •0•0•0•0•Updated Sep 26, 2025Sep 26, 2025

    • covid19_analysis

      Public
      R
      •
      MIT License
      •0•0•5•0•Updated Jun 15, 2025Jun 15, 2025

    • cbc-references-refchef

      Public
      Computational Biology Core List of References for RefChef
      Python
      •
      GNU General Public License v3.0
      •0•0•0•1•Updated Jun 5, 2025Jun 5, 2025

    • ccv_bootcamp_epigenomics_rnaseq

      Public
      Dockerfile
      •
      MIT License
      •0•0•0•0•Updated Jun 5, 2025Jun 5, 2025

    • ccv_bootcamp_annotations

      Public
      Dockerfile
      •
      MIT License
      •0•0•0•0•Updated Jun 4, 2025Jun 4, 2025

    • ccv_bootcamp_Reproducibility_R

      Public
      Jupyter Notebook
      •0•2•0•0•Updated Jun 3, 2025Jun 3, 2025

    • analysis_template

      Public template
      Template for analysis repositories
      MIT License
      •0•0•1•0•Updated May 20, 2025May 20, 2025

    • brodsky_scte

      Public
      Apply the scTE pipeline to process human cartilage data from Ji et al 2017 and try to identify clusters corresponding to transposable elements, specifically Lin…
      Shell
      •
      MIT License
      •0•0•0•0•Updated Nov 12, 2024Nov 12, 2024

    • refchef-test

      Public
      0•0•0•0•Updated Sep 4, 2024Sep 4, 2024

    • refchef

      Public
      YAML-based genomics reference management.
      Python
      •
      GNU General Public License v3.0
      •2•4•9•0•Updated Aug 27, 2024Aug 27, 2024

    • dennery_reanalysis_2024

      Public
      MIT License
      •0•0•0•0•Updated Aug 1, 2024Aug 1, 2024

    • ccv_bootcamp_scrna

      Public
      HTML
      •
      MIT License
      •0•0•0•0•Updated Jul 15, 2024Jul 15, 2024

    • ccv_bootcamp_phylogenetics

      Public
      Phylogenetics workshop for CCV Bootcamp 2024
      Shell
      •
      MIT License
      •0•1•0•0•Updated Jun 14, 2024Jun 14, 2024

    • workflows_for_repr_research

      Public
      Jupyter Notebook
      •0•0•0•0•Updated Jun 14, 2024Jun 14, 2024

    • ccv_bootcamp_RNAseq

      Public
      Jupyter Notebook
      •0•0•0•0•Updated Jun 12, 2024Jun 12, 2024

    • dscov_singlecell_2024

      Public
      HTML
      •
      MIT License
      •0•0•0•0•Updated May 16, 2024May 16, 2024

    • workflow_prototypes_on_OSCAR

      Public
      Nextflow
      •0•0•0•0•Updated Apr 3, 2024Apr 3, 2024
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