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    150 repositories

    • ncbi-cxx-toolkit-public

      Public
      NCBI C++ Toolkit package sources
      C++
      •
      Other
      •44•96•3•1•Updated Apr 19, 2026Apr 19, 2026

    • sra-tools

      Public
      SRA Tools
      C
      •
      Other
      •279•1.3k•24•9•Updated Apr 17, 2026Apr 17, 2026

    • ncbi-vdb

      Public
      ncbi-vdb
      C
      •
      Other
      •42•97•9•1•Updated Apr 17, 2026Apr 17, 2026

    • tree-tool

      Public
      Incremental building of phylogenetic distance trees
      bioinformaticsevolutionphylogenetic-trees
      bioinformaticsevolutionphylogenetic-treesdata-analysisdistance-measuresbioinformatics-tool
      HTML
      •
      Other
      •10•31•0•0•Updated Apr 16, 2026Apr 16, 2026

    • ncbi-cxx-toolkit-conan

      Public
      NCBI C++ Toolkit package recipe
      Python
      •11•12•0•0•Updated Apr 15, 2026Apr 15, 2026

    • icn3d

      Public
      web-based protein structure viewer and analysis tool interactively or in batch mode
      nodejsdelphiwebgl
      nodejsdelphiwebglvrarjupyter-notebookchemicalproteinsnpnucleotide
      JavaScript
      •
      Other
      •53•172•7•2•Updated Apr 15, 2026Apr 15, 2026

    • egapx

      Public
      Eukaryotic Genome Annotation Pipeline-External caller scripts and documentation
      Nextflow
      •
      Other
      •21•188•9•0•Updated Apr 14, 2026Apr 14, 2026

    • dbvar

      Public
      dbVar
      structuralvariationdbvar
      structuralvariationdbvar
      14•41•8•0•Updated Apr 10, 2026Apr 10, 2026

    • cxx-toolkit

      Public
      HTML
      •
      The Unlicense
      •52•21•0•0•Updated Apr 9, 2026Apr 9, 2026

    • datasets

      Public
      NCBI Datasets is a new resource that lets you easily gather data from across NCBI databases.
      ncbigenomics-data
      ncbigenomics-data
      Jupyter Notebook
      •
      Other
      •61•527•20•2•Updated Apr 6, 2026Apr 6, 2026

    • amr

      Public
      AMRFinderPlus - Identify AMR genes and point mutations, and virulence and stress resistance genes in assembled bacterial nucleotide and protein sequence.
      bioinformaticsgenomicspathogen
      bioinformaticsgenomicspathogenantibiotic-resistance
      C++
      •
      Other
      •50•359•9•0•Updated Mar 29, 2026Mar 29, 2026

    • blast_plus_docs

      Public
      33•119•5•1•Updated Mar 24, 2026Mar 24, 2026

    • ncbi-logging

      Public
      Log monitoring and gathering infrastructure to feed analytics
      C++
      •11•15•0•2•Updated Mar 24, 2026Mar 24, 2026

    • ncbi-vdb-conan

      Public
      Conan package recipe for NCBI VDB Toolkit
      Python
      •1•1•0•0•Updated Mar 20, 2026Mar 20, 2026

    • sra-tutorials

      Public
      Tutorials and guides for using the Sequence Read Archive
      MIT License
      •0•3•0•0•Updated Mar 11, 2026Mar 11, 2026

    • ngs-tools

      Public
      C++
      •
      Other
      •25•110•7•4•Updated Mar 10, 2026Mar 10, 2026

    • GNorm2

      Public
      Java
      •11•28•7•0•Updated Feb 23, 2026Feb 23, 2026

    • clinvar

      Public
      ClinVar aggregates information about genomic variation and its relationship to human health. Contact us at 'clinvar@ncbi.nlm.nih.gov' with any questions or…
      HTML
      •16•83•4•0•Updated Feb 19, 2026Feb 19, 2026

    • ncbi_doc_template

      Public
      CSS
      •
      The Unlicense
      •6•4•0•0•Updated Feb 11, 2026Feb 11, 2026

    • pgap

      Public
      NCBI Prokaryotic Genome Annotation Pipeline
      Common Workflow Language
      •
      Other
      •94•375•0•0•Updated Feb 9, 2026Feb 9, 2026

    • elastic-blast

      Public
      ElasticBLAST is a cloud-based tool to perform your BLAST searches faster and make you more effective
      bioinformaticsblastncbi
      bioinformaticsblastncbi
      Python
      •
      Other
      •22•69•3•0•Updated Jan 29, 2026Jan 29, 2026

    • docker

      Public
      Dockerfile
      •
      Other
      •34•54•2•0•Updated Jan 22, 2026Jan 22, 2026

    • redenovo

      Public
      Python
      •
      MIT License
      •0•2•0•0•Updated Jan 18, 2026Jan 18, 2026

    • stxtyper

      Public
      StxTyper uses a standardized algorithm to accurately type both known and unknown Shiga toxin operons from assembled genomic sequence.
      bioinformaticsgenomicspathogen
      bioinformaticsgenomicspathogenescherichia-colibioinformatics-toolvirulence-genes
      C++
      •
      Other
      •6•16•1•0•Updated Dec 9, 2025Dec 9, 2025

    • EvoGeneX

      Public
      This repository contains the source code of the R package for EvoGeneX, a software to infer the mode of evolution from the gene expression data.
      HTML
      •
      GNU General Public License v3.0
      •6•29•3•0•Updated Dec 1, 2025Dec 1, 2025

    • elastic-blast-docs

      Public
      ElasticBLAST documentation
      Other
      •5•5•0•0•Updated Nov 26, 2025Nov 26, 2025

    • SpacePhenotyper

      Public
      Jupyter Notebook
      •0•3•1•0•Updated Nov 24, 2025Nov 24, 2025

    • SSDraw

      Public
      JavaScript
      •
      Other
      •12•89•2•0•Updated Nov 18, 2025Nov 18, 2025

    • workshop-sra-hands-on

      Public
      SRA Outreach to the NIH Research Festival and ASHG 2025
      0•2•0•0•Updated Sep 10, 2025Sep 10, 2025

    • pubchem-align3d

      Public
      This is a generic C++ library that can be used to rapidly align two small molecules in 3D space, with shape - and optionally color - Tanimoto scoring. Included …
      C++
      •
      Other
      •4•16•1•0•Updated Sep 3, 2025Sep 3, 2025
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