Repositories list

• omero-iviewer

  Public
  An OMERO.web app allowing to view images

  webappomero

  webappomero

  JavaScript

  •

  Other

  •3636 forks•2020 stars•6161 issues•44 pull requests•Updated Aug 31, 2026Aug 31, 2026

• bioformats

  Public
  Bio-Formats is a Java library for reading and writing data in life sciences image file formats. It is developed by the Open Microscopy Environment. Bio-Formats…

  javametadataimage+ 7

  javametadataimageformat-readerformat-converterbio-formatslife-sciences-imagewhole-slide-imagingwsilightsheet

  Java

  •

  GNU General Public License v2.0

  •261261 forks•428428 stars•152152 issues•2222 pull requests•Updated Aug 31, 2026Aug 31, 2026

• ngff

  Public
  Next-generation file format (NGFF) specifications for storing bioimaging data in the cloud.

  data-sciencecloudspec+ 2

  data-sciencecloudspecbioimagingfile-formats

  Python

  •

  Other

  •7575 forks•171171 stars•111111 issues•88 pull requests•Updated Aug 31, 2026Aug 31, 2026

• omero-cli-zarr

  Public
  omerozarrngff+ 1

  omerozarrngffome-zarr-converter

  Python

  •

  GNU General Public License v2.0

  •1212 forks•2222 stars•2323 issues•66 pull requests•Updated Aug 31, 2026Aug 31, 2026

• upptime

  Public
  📈 Uptime monitor and status page for OME, powered by @upptime

  uptime-monitorstatus-pageupptime

  uptime-monitorstatus-pageupptime

  Markdown

  •

  MIT License

  •22 forks•11 star•11 issue•00 pull requests•Updated Aug 31, 2026Aug 31, 2026

• www.openmicroscopy.org

  Public
  OME main website

  jekyll-siteome

  jekyll-siteome

  HTML

  •

  Creative Commons Attribution 4.0 International

  •2727 forks•66 stars•1616 issues•22 pull requests•Updated Aug 31, 2026Aug 31, 2026

• status

  Public
  Status dashboard for the OME project

  statusdashboardgh-pages+ 1

  statusdashboardgh-pagesome

  HTML

  •44 forks•11 star•77 issues•11 pull request•Updated Aug 30, 2026Aug 30, 2026

• ngff-spec

  Public
  Next-generation file format (NGFF) specifications for storing bioimaging data in the cloud.

  Python

  •1919 forks•1414 stars•2222 issues•77 pull requests•Updated Aug 28, 2026Aug 28, 2026

• ome-zarr-py

  Public
  Implementation of next-generation file format (NGFF) specifications for storing bioimaging data in the cloud.

  omezarrngff+ 1

  omezarrngffome-zarr

  Python

  •

  Other

  •7373 forks•258258 stars•6868 issues•1313 pull requests•Updated Aug 28, 2026Aug 28, 2026

• ansible-role-postgresql

  Public
  Install upstream PostgreSQL server. Optionally creates users and databases.

  ansibledatabasepostgresql+ 1

  ansibledatabasepostgresqlrole

  Python

  •

  BSD 2-Clause "Simplified" License

  •1818 forks•1111 stars•00 issues•00 pull requests•Updated Aug 26, 2026Aug 26, 2026

• meeting-minutes

  Public
  Minutes from the weekly OME community meetings

  Creative Commons Attribution 4.0 International

  •66 forks•00 stars•11 issue•00 pull requests•Updated Aug 25, 2026Aug 25, 2026

• omero-web

  Public
  Django-based OMERO.web client

  pythonclientdjango+ 2

  pythonclientdjangowebomero

  Python

  •4040 forks•2424 stars•139139 issues•99 pull requests•Updated Aug 25, 2026Aug 25, 2026

• omero-zarr-pixel-buffer

  Public
  OMERO Zarr Pixel Buffer Implementation

  Java

  •

  GNU General Public License v2.0

  •1010 forks•00 stars•00 issues•11 pull request•Updated Aug 24, 2026Aug 24, 2026

• omero-figure

  Public
  An OMERO.web app for creating Figures from images in OMERO

  webappomero

  webappomero

  JavaScript

  •

  GNU Affero General Public License v3.0

  •3838 forks•2222 stars•6262 issues•11 pull request•Updated Aug 21, 2026Aug 21, 2026

• devspace

  Public
  Continuous integration tool for OME projects

  dockerjenkinscontinuous-integration+ 2

  dockerjenkinscontinuous-integrationomerodevs

  Shell

  •1818 forks•1919 stars•2121 issues•44 pull requests•Updated Aug 21, 2026Aug 21, 2026

• openmicroscopy

  Public
  OME (Open Microscopy Environment) develops open-source software and data format standards for the storage and manipulation of biological light microscopy data. …

  pythonjavaimage+ 3

  pythonjavaimagedatabaseserveromero

  Java

  •

  GNU General Public License v2.0

  •105105 forks•222222 stars•2626 issues•55 pull requests•Updated Aug 21, 2026Aug 21, 2026

• omero-documentation

  Public
  Sphinx-based documentation for the Open Microscopy Environment

  documentationomeroome

  documentationomeroome

  Python

  •

  BSD 2-Clause "Simplified" License

  •5252 forks•2424 stars•2222 issues•33 pull requests•Updated Aug 20, 2026Aug 20, 2026

• napari-ome-zarr

  Public
  A napari plugin for zarr backed OME-NGFF images

  pythonnapari-pluginzarr+ 1

  pythonnapari-pluginzarrngff

  Python

  •

  BSD 3-Clause "New" or "Revised" License

  •2727 forks•5454 stars•3030 issues•99 pull requests•Updated Aug 18, 2026Aug 18, 2026

• ome-contributing

  Public
  77 forks•11 star•11 issue•33 pull requests•Updated Aug 18, 2026Aug 18, 2026

• omero-demo-cleanup

  Public
  A CLI plugin for managing the disk space on the OME demo server

  Python

  •

  GNU General Public License v2.0

  •44 forks•22 stars•00 issues•11 pull request•Updated Aug 17, 2026Aug 17, 2026

• bioimage-latency-benchmark

  Public
  Jupyter Notebook

  •

  Other

  •1010 forks•99 stars•66 issues•44 pull requests•Updated Aug 17, 2026Aug 17, 2026

• ome_zarr_test_suite

  Public
  Test suite of reader and writer implementations

  Python

  •77 forks•55 stars•33 issues•33 pull requests•Updated Aug 17, 2026Aug 17, 2026

• ome-ngff-validator

  Public
  Web page for validating OME-NGFF files

  ome-zarr

  ome-zarr

  Svelte

  •

  BSD 2-Clause "Simplified" License

  •99 forks•1212 stars•1515 issues•55 pull requests•Updated Aug 17, 2026Aug 17, 2026

• governance

  Public
  Source repository for OME governance charters, rosters, policies and other community documents

  open-sourcecommunityopen-science+ 4

  open-sourcecommunityopen-sciencemicroscopygovernanceomebioimaging

  77 forks•33 stars•11 issue•44 pull requests•Updated Aug 17, 2026Aug 17, 2026

• bio-formats-documentation

  Public
  Bio-Formats documentation

  documentationbio-formats

  documentationbio-formats

  Java

  •

  BSD 2-Clause "Simplified" License

  •1919 forks•99 stars•55 issues•11 pull request•Updated Aug 14, 2026Aug 14, 2026

• omero-blitz

  Public
  Gradle project containing Ice remoting code for OMERO

  componentserverjar+ 2

  componentserverjarlibomero

  Java

  •

  GNU General Public License v2.0

  •1515 forks•00 stars•3131 issues•00 pull requests•Updated Aug 14, 2026Aug 14, 2026

• omero-server

  Public
  Gradle project containing main server logic for OMERO

  componentserverjar+ 2

  componentserverjarlibomero

  Java

  •

  GNU General Public License v2.0

  •1616 forks•88 stars•3636 issues•11 pull request•Updated Aug 14, 2026Aug 14, 2026

• omero-metadata

  Public
  OMERO plugin for metadata manipulation https://www.openmicroscopy.org/omero/

  climetadataomero

  climetadataomero

  Python

  •

  GNU General Public License v2.0

  •1313 forks•1010 stars•2121 issues•33 pull requests•Updated Aug 10, 2026Aug 10, 2026

• ome-model

  Public
  OME model (specification, code generator, implementation)

  imageschemadata-model+ 3

  imageschemadata-modelspecificationcode-generationome-model

  XSLT

  •

  Other

  •2929 forks•1717 stars•99 issues•11 pull request•Updated Aug 7, 2026Aug 7, 2026

• omero-server-docker

  Public
  OMERO.server production docker image

  dockeromeroome+ 2

  dockeromeroomeopenmicroscopyomero-server

  Shell

  •

  BSD 2-Clause "Simplified" License

  •3333 forks•1717 stars•1212 issues•88 pull requests•Updated Aug 5, 2026Aug 5, 2026