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Update h5py to 3.16.0#66

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jan-janssen merged 3 commits into
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h5py
Mar 27, 2026
Merged

Update h5py to 3.16.0#66
jan-janssen merged 3 commits into
mainfrom
h5py

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Copilot AI review requested due to automatic review settings March 27, 2026 10:52
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Binder 👈 Launch a binder notebook on branch pyiron/sphinx_parser/h5py

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codecov Bot commented Mar 27, 2026

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Codecov Report

✅ All modified and coverable lines are covered by tests.
✅ Project coverage is 88.54%. Comparing base (5fb907e) to head (af2969d).
⚠️ Report is 4 commits behind head on main.

Additional details and impacted files
@@           Coverage Diff           @@
##             main      #66   +/-   ##
=======================================
  Coverage   88.54%   88.54%           
=======================================
  Files           8        8           
  Lines         812      812           
=======================================
  Hits          719      719           
  Misses         93       93           

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Pull request overview

Updates the project’s pinned h5py dependency version across packaging and environment specifications to align runtime, CI, and documentation/Binder environments.

Changes:

  • Bump h5py pin from 3.15.0 to 3.16.0 in pyproject.toml.
  • Update the conda environment pin(s) to match the new h5py version.

Reviewed changes

Copilot reviewed 4 out of 4 changed files in this pull request and generated 2 comments.

File Description
pyproject.toml Updates the package dependency pin for h5py to 3.16.0.
docs/environment.yml Intended to align the docs build conda environment’s h5py pin with the package dependency.
.ci_support/environment.yml Aligns CI conda environment h5py pin with the package dependency.
.binder/environment.yml Intended to align Binder conda environment h5py pin with the package dependency.

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Comment thread .binder/environment.yml
Comment on lines 8 to 10
- black =25.1.0
- h5py =3.15.0
- h5py =3.16.0
- ase =3.27.0

Copilot AI Mar 27, 2026

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This environment file still pins h5py to 3.15.0, which is now inconsistent with the h5py==3.16.0 pin in pyproject.toml (and CI env). Update this pin as well so Binder uses the same h5py version as the rest of the project.

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Comment thread docs/environment.yml
Comment on lines 13 to 16
- numpy =2.3.5
- black =25.1.0
- h5py =3.15.0
- h5py =3.16.0
- ase =3.27.0

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This docs environment file still pins h5py to 3.15.0, which is inconsistent with the updated h5py==3.16.0 dependency pin in pyproject.toml. Please bump it here too so the documentation build environment matches the package/CI dependencies.

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@jan-janssen jan-janssen merged commit ba22d62 into main Mar 27, 2026
20 checks passed
@jan-janssen jan-janssen deleted the h5py branch March 27, 2026 10:57
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3 participants