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[WIP] New ebi submit [WIP] - #704

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adamrp wants to merge 7 commits into
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adamrp:new_ebi_submit
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[WIP] New ebi submit [WIP]#704
adamrp wants to merge 7 commits into
qiime:masterfrom
adamrp:new_ebi_submit

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@adamrp

@adamrp adamrp commented May 27, 2014

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Almost there, but I thought I'd get this in now so that people can begin reviewing, it's kind of big.

Needs:

  • Logging
  • Test code
  • Script file (this is the library code)
  • MD5 Calculations
  • Final step that calls ASCP on the XML files generated

Comment thread python_code/ebi.py Outdated

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should this drop #?

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Yeah it could, but the prep/sample templates I get from Gail never have comment lines starting with #

@adamrp

adamrp commented Jun 9, 2014

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Thanks for the review @wasade, I'll implement these changes soon!

Comment thread python_code/ebi.py

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It would be nice to have descriptions for this and the subsequent Exceptions.

@ElDeveloper

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I like how the code is looking!

I would like to hear what your plans are for testing the main EBI object, as it stands right now, I can see that it's acting a lot as a data formatter, hence I would be inclined to leave the submission of files to a separate object, would be curious to hear what others think.

@wasade

wasade commented Jun 9, 2014

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Agree, submit should be external
On Jun 9, 2014 1:21 PM, "Yoshiki Vázquez Baeza" notifications@github.com
wrote:

I like how the code is looking!

I would like to hear what your plans are for testing the main EBI object,
as it stands right now, I can see that it's acting a lot as a data
formatter, hence I would be inclined to leave the submission of files to a
separate object, would be curious to hear what others think.


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3 participants