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directsketch outputs FASTA files with .gz extension but they are not compressed

Status: Open.

#308 In sourmash-bio/sourmash_plugin_directsketch;

· ctb opened on Jan 2, 2026

a directsketch poem

Status: Open.

#273 In sourmash-bio/sourmash_plugin_directsketch;

· ctb opened on Jun 16, 2025

add NCBI api key secret to prevent test failures?

Status: Open.

#267 In sourmash-bio/sourmash_plugin_directsketch;

· bluegenes opened on Jun 2, 2025

gbsketch: document need for accession versions (and/or add accession version find and update step)

Status: Open.

#263 In sourmash-bio/sourmash_plugin_directsketch;

· bluegenes opened on May 19, 2025

make simple single-accession gbsketch entry point?

Status: Open.

#262 In sourmash-bio/sourmash_plugin_directsketch;

· bluegenes opened on May 19, 2025

use existing sigs to filter accessions requested in dehydrated file

Status: Open.

#258 In sourmash-bio/sourmash_plugin_directsketch;

· bluegenes opened on May 7, 2025

add cancellation checkpoints while getting/parsing dehydrated zipfile

Status: Open.

#257 In sourmash-bio/sourmash_plugin_directsketch;

· bluegenes opened on May 6, 2025

rust library for reading/parsing SRA format

Status: Open.

#256 In sourmash-bio/sourmash_plugin_directsketch;

· bluegenes opened on May 1, 2025

benchmarking v0.6

Status: Open.

#254 In sourmash-bio/sourmash_plugin_directsketch;

· bluegenes opened on Apr 29, 2025

look into downloader crate

Status: Open.

#202 In sourmash-bio/sourmash_plugin_directsketch;

· bluegenes opened on Jan 30, 2025

improve input csv reading by using column names

Status: Open.

#198 In sourmash-bio/sourmash_plugin_directsketch;

· bluegenes opened on Jan 28, 2025

allow merged downloads in gbsketch

Status: Open.

#193 In sourmash-bio/sourmash_plugin_directsketch;

· bluegenes opened on Jan 23, 2025