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Ref sequence output for sequencer.py is a concatenation of the mut and wt

bugSomething isn't workingSomething isn't working

size: S

Status: Open.

#234 In summerela/ShortStack;

· NicoleEO opened on Jun 26, 2019

Re-write pipeline to align against WT and all variants then select best alignment.

Status: Open.

#230 In summerela/ShortStack;

· summerela opened on Apr 18, 2019

standardize panel-generated inputs for hexsembler

size: S

Status: Open.

#224 In summerela/ShortStack;

· kzeller2 opened on Mar 7, 2019

Test Nsolver Output

size: S

Status: Open.

#220 In summerela/ShortStack;

· kzeller2 opened on Mar 7, 2019

validator for standard outputs

size: S

Status: Open.

#218 In summerela/ShortStack;

· kzeller2 opened on Mar 7, 2019

FTM output to Nsolver-compatible inputs

size: S

Status: Open.

#216 In summerela/ShortStack;

· kzeller2 opened on Mar 7, 2019

Define release and test cycle

epic: implement qa procedures

size: S

Status: Open.

#213 In summerela/ShortStack;

· kzeller2 opened on Mar 7, 2019

update FTM documentation (SDD template)

epic: implement regular updates of documentation

size: S

Status: Open.

#200 In summerela/ShortStack;

· kzeller2 opened on Mar 7, 2019

Add handling of reverse compliment

enhancementNew feature or requestNew feature or request

pri: M

size: M

Status: Open.

#185 In summerela/ShortStack;

· summerela opened on Feb 15, 2019

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Program Increment 1

Add information differentiating unique WT hexamers to bc_counts/all_counts/rawCounts

Status: Open.

#182 In summerela/ShortStack;

· joephun opened on Feb 7, 2019

·  

Program Increment 1

Output IUPAC rather than N for sites with ambiguous sites (more than 1 call)

Status: Open.

#155 In summerela/ShortStack;

· Vera-D opened on Jan 10, 2019

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Program Increment 1

Optimize sequence.py

Status: Open.

#135 In summerela/ShortStack;

· summerela opened on Jan 3, 2019

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Program Increment 1