Latest release#54
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(and change how we find zlib for it.)
(and libsbml; a minor change)
Memory leak fixes and significant efficiency updates.
- the third-party nleq2 is updated to the latest version
The libsbml update puts us back on the main branch after having lived in an auxilliary branch for quite some time--things are finally fixed there that work well enough that both we and the libsbml team are happy. It also fixes a bug we found in libsbml in the render implementation.
The major change was the ability to set/get notes as markdown. Also a fix for reading/writing biomodel 988, which had weirdnesses with the layout extension.
The latest compilers should also create the most efficient code, so use them if possible. Added because libsbml now says that it needs c++11 code, and if you don't tell it to use something later, it'll therefore revert to c++11.
Update expat
Update NuML, libSEDML, poco
There might be a problem with the dependencies; we'll see.
Update SBMLNetwork and libsbml.
Change our link to zlib to the original from madler.
With the old zlib not compiling on the latest macOS, I figured it was time to just update everything.
Update all third-party libraries.
Had to use our own fork so it wouldn't try to re-build zlib.
Build on macos-15.
Also update poco.
Fix the libsbml build.
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