TI Note i2b2 Data Source Plugin

TI Note i2b2 Data Source Plugin API Operations

The operations are documented here.

Build

Build plugin to build/geco-i2b2-data-source.so:

make go-build-plugin

Test

Start dependencies

Start i2b2:

make i2b2-docker-compose ARGS="up -d"

Run tests

Test i2b2 docker:

make i2b2-test

Run go unit tests i2b2 docker:

make go-unit-tests

Development

Source code organization

• build/package/i2b2/: i2b2 docker image definition
• cmd/geco-i2b2-data-source/: go main package for the plugin
• pkg/: exported go code
  • i2b2client/: client for i2b2 HTTP XML API
  • datasource/: definition of the i2b2 data source
    • database/: database wrapper for the datasource
• scripts/: utility scripts
• test/i2b2/: test files for the i2b2 docker image