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@AllenInstitute

Allen Institute

Please visit http://alleninstitute.github.io/ for more information.

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  1. AllenSDK AllenSDK Public

    code for reading and processing Allen Institute for Brain Science data

    Jupyter Notebook 355 152

  2. dipde dipde Public

    Numerical solver for coupled population density equations

    Python 23 14

Repositories

Showing 10 of 417 repositories
  • npc_sessions_cache Public

    Scripts, notebooks and plots that operate on NWB or NWB-like objects from `npc_sessions` in the cloud.

    AllenInstitute/npc_sessions_cache’s past year of commit activity
    Jupyter Notebook 0 0 0 0 Updated Mar 1, 2025
  • npc_lims Public

    Tools to fetch and update paths, metadata and state for Mindscope Neuropixels sessions, in the cloud.

    AllenInstitute/npc_lims’s past year of commit activity
    Python 0 MIT 0 3 0 Updated Mar 1, 2025
  • mri_image_label_transfer Public
    AllenInstitute/mri_image_label_transfer’s past year of commit activity
    Python 0 0 0 0 Updated Mar 1, 2025
  • biomolvec-data Public
    AllenInstitute/biomolvec-data’s past year of commit activity
    Jupyter Notebook 0 0 0 0 Updated Mar 1, 2025
  • bmtk Public

    Brain Modeling Toolkit

    AllenInstitute/bmtk’s past year of commit activity
    Python 284 BSD-3-Clause 91 60 9 Updated Mar 1, 2025
  • biofile-finder Public

    An open-use web application created for easy access, collaboration, and sharing of datasets through rich metadata search, filter, sort, and direct viewing in common industry applications or in our web-based 3D Volume Viewer.

    AllenInstitute/biofile-finder’s past year of commit activity
    TypeScript 5 BSD-3-Clause 2 50 5 Updated Feb 28, 2025
  • MIES Public

    Multichannel Igor Electrophysiology Suite

    AllenInstitute/MIES’s past year of commit activity
    IGOR Pro 25 9 288 10 Updated Feb 28, 2025
  • motion_energy_PCA Public
    AllenInstitute/motion_energy_PCA’s past year of commit activity
    Jupyter Notebook 1 0 0 0 Updated Feb 28, 2025
  • npc_ephys Public

    Tools for accessing and processing raw ephys data, compatible with data in the cloud.

    AllenInstitute/npc_ephys’s past year of commit activity
    Python 0 MIT 2 0 0 Updated Feb 28, 2025
  • compute_motion_energy Public

    Step 2 of Behavior Video QC pipeline. Loads video Barr files and computes motion energy in 3d and

    AllenInstitute/compute_motion_energy’s past year of commit activity
    Jupyter Notebook 0 0 0 0 Updated Feb 28, 2025
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