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@AllenInstitute

Allen Institute

Please visit http://alleninstitute.github.io/ for more information.

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  1. AllenSDK AllenSDK Public

    code for reading and processing Allen Institute for Brain Science data

    Jupyter Notebook 380 166

  2. dipde dipde Public

    Numerical solver for coupled population density equations

    Python 26 15

Repositories

Showing 10 of 478 repositories
  • deep_ccf_registration Public

    Tissue slice registration to the CCF using deep learning

    AllenInstitute/deep_ccf_registration’s past year of commit activity
    Jupyter Notebook 2 0 0 0 Updated Apr 23, 2026
  • mtrain_regimens Public

    Repository to track training stages and regimens for visual behavior

    AllenInstitute/mtrain_regimens’s past year of commit activity
    Python 3 4 14 0 Updated Apr 23, 2026
  • neuron-proofreader Public

    NeuronProofreader is a Python library for automated proofreading of split and merge mistakes in neuron reconstructions.

    AllenInstitute/neuron-proofreader’s past year of commit activity
    Python 8 MIT 0 0 1 Updated Apr 23, 2026
  • biofile-finder Public

    An open-use web application created for easy access, collaboration, and sharing of datasets through rich metadata search, filter, sort, and direct viewing in common industry applications or in our web-based 3D Volume Viewer.

    AllenInstitute/biofile-finder’s past year of commit activity
    TypeScript 17 BSD-3-Clause 5 108 4 Updated Apr 23, 2026
  • OCS-Submission-Capsule-API Public
    AllenInstitute/OCS-Submission-Capsule-API’s past year of commit activity
    Python 0 0 0 0 Updated Apr 23, 2026
  • xenium_analysis_tools Public
    AllenInstitute/xenium_analysis_tools’s past year of commit activity
    Jupyter Notebook 2 MIT 0 1 3 Updated Apr 23, 2026
  • ConnectsCommonConnectivity Public

    A repository to organize data models and code for creating a pilot common connectiivty matrix for BRAIN CONNECTS

    AllenInstitute/ConnectsCommonConnectivity’s past year of commit activity
    Jupyter Notebook 1 MIT 1 0 1 Updated Apr 22, 2026
  • MIES Public

    Multichannel Igor Electrophysiology Suite

    AllenInstitute/MIES’s past year of commit activity
    IGOR Pro 29 9 278 11 Updated Apr 22, 2026
  • pytorch-CycleGAN-and-pix2pix Public Forked from junyanz/pytorch-CycleGAN-and-pix2pix

    Image-to-Image Translation in PyTorch

    AllenInstitute/pytorch-CycleGAN-and-pix2pix’s past year of commit activity
    Python 0 6,633 0 0 Updated Apr 22, 2026
  • CHARGE Public

    Cell HierARchy Gene Explorer (CHARGE) is an interactive tool for identifying genes of potential biological interest in a cell type taxonomy.

    AllenInstitute/CHARGE’s past year of commit activity
    R 0 0 0 0 Updated Apr 22, 2026
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