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Merged
blowekamp merged 3 commits into from
Mar 6, 2026
Merged

ENH: Update MINC to fdf1845 #5873

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5eee54e
ENH: Update MINC to fdf1845
blowekamp Mar 6, 2026
5a30d85
MINC 2026-02-21 (fdf18452)
vfonov Feb 21, 2026
3f88e77
MINC 2026-02-21 (fdf18452)
blowekamp Mar 6, 2026
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2 changes: 1 addition & 1 deletion Modules/ThirdParty/MINC/UpdateFromUpstream.sh
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Original file line number Diff line number Diff line change
Expand Up @@ -8,7 +8,7 @@ readonly name="MINC"
readonly ownership="Vladimir S. FONOV <vladimir.fonov@gmail.com>"
readonly subtree="Modules/ThirdParty/MINC/src/libminc"
readonly repo="https://github.com/BIC-MNI/libminc.git"
readonly tag="master"
readonly tag="fdf1845"
readonly exact_tree_match=false
readonly paths="
./ChangeLog
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20 changes: 11 additions & 9 deletions Modules/ThirdParty/MINC/src/libminc/CMakeLists.txt
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Expand Up @@ -3,7 +3,7 @@
# Andrew Janke - a.janke@gmail.com
# Vladimir S. FONOV - vladimir.fonov@gmail.com

cmake_minimum_required(VERSION 3.10)
cmake_minimum_required(VERSION 3.10...4.2)

project(LIBMINC)

Expand All @@ -24,9 +24,7 @@ include(CTest)

enable_testing()

if( POLICY CMP0063 )
cmake_policy(SET CMP0063 NEW)
endif()
include(GNUInstallDirs)

if(MINC_TOOLKIT_BUILD)
set(LIBMINC_EXTERNALLY_CONFIGURED ON)
Expand Down Expand Up @@ -58,11 +56,15 @@ if(NOT LIBMINC_EXTERNALLY_CONFIGURED)

option(LIBMINC_USE_ASAN "Build with Address Sanitizer" OFF)

if(DEFINED LIB_SUFFIX)
message(WARNING "LIB_SUFFIX is deprecated, use the standard CMAKE_INSTALL_LIBDIR instead")
endif()

set (LIBMINC_EXPORTED_TARGETS "LIBMINC-targets")
set (LIBMINC_INSTALL_BIN_DIR bin)
set (LIBMINC_INSTALL_LIB_DIR lib${LIB_SUFFIX})
set (LIBMINC_INSTALL_INCLUDE_DIR include)
set (LIBMINC_INSTALL_DATA_DIR share)
set (LIBMINC_INSTALL_BIN_DIR ${CMAKE_INSTALL_BINDIR})
set (LIBMINC_INSTALL_LIB_DIR ${CMAKE_INSTALL_LIBDIR})
set (LIBMINC_INSTALL_INCLUDE_DIR ${CMAKE_INSTALL_INCLUDEDIR})
set (LIBMINC_INSTALL_DATA_DIR ${CMAKE_INSTALL_DATADIR})

if(LIBMINC_MINC1_SUPPORT)
find_package(NETCDF REQUIRED)
Expand Down Expand Up @@ -460,7 +462,7 @@ endif()
#START - ITK
set(VOLUME_IO_LIBRARY ${LIBMINC_EXTERNAL_LIB_PREFIX}minc2)
#STOP - ITK
set(CMAKE_INSTALL_RPATH ${CMAKE_INSTALL_PREFIX}/lib${LIB_SUFFIX})
set(CMAKE_INSTALL_RPATH ${CMAKE_INSTALL_PREFIX}/${CMAKE_INSTALL_LIBDIR})

add_library(${LIBMINC_LIBRARY} ${LIBRARY_TYPE} ${minc_LIB_SRCS} ${minc_HEADERS} ${volume_io_LIB_SRCS} ${volume_io_HEADERS} )

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80 changes: 40 additions & 40 deletions Modules/ThirdParty/MINC/src/libminc/config.h.cmake
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Expand Up @@ -12,56 +12,56 @@
#define MINC_VERSION "@LIBMINC_PACKAGE_VERSION@"
#define MINC_PACKAGE_STRING "@LIBMINC_PACKAGE_STRING@"

#cmakedefine HAVE_MINC1 1
#cmakedefine HAVE_MINC1 1
#cmakedefine HAVE_MINC2 1
#cmakedefine LIBMINC_NIFTI_SUPPORT 1

#ifndef H5Acreate_vers
#define H5Acreate_vers 2
#endif //H5Acreate_vers

#cmakedefine HAVE_MKSTEMP 1
#cmakedefine HAVE_STRERROR 1
#cmakedefine HAVE_MKSTEMP 1
#cmakedefine HAVE_STRERROR 1

#cmakedefine HAVE_COPYSIGN 1
#cmakedefine HAVE_ROUND 1
#cmakedefine HAVE_COPYSIGN 1
#cmakedefine HAVE_ROUND 1

#cmakedefine HAVE_DIRENT_H 1
#cmakedefine HAVE_DLFCN_H 1
#cmakedefine HAVE_FCNTL_H 1
#cmakedefine HAVE_FORK 1
#cmakedefine HAVE_GETPWNAM 1
#cmakedefine HAVE_INT16_T 1
#cmakedefine HAVE_INT32_T 1
#cmakedefine HAVE_INTTYPES_H 1
#cmakedefine HAVE_MKSTEMP 1
#cmakedefine HAVE_NDIR_H 1
#cmakedefine HAVE_POPEN 1
#cmakedefine HAVE_PWD_H 1
#cmakedefine HAVE_SELECT 1
#cmakedefine HAVE_STDINT_H 1
#cmakedefine HAVE_STRDUP 1
#cmakedefine HAVE_SYSCONF 1
#cmakedefine HAVE_SYSTEM 1
#cmakedefine HAVE_SYS_DIR_H 1
#cmakedefine HAVE_SYS_NDIR_H 1
#cmakedefine HAVE_SYS_STAT_H 1
#cmakedefine HAVE_SYS_TIME_H 1
#cmakedefine HAVE_SYS_TYPES_H 1
#cmakedefine HAVE_SYS_WAIT_H 1
#cmakedefine HAVE_DIRENT_H 1
#cmakedefine HAVE_DLFCN_H 1
#cmakedefine HAVE_FCNTL_H 1
#cmakedefine HAVE_FORK 1
#cmakedefine HAVE_GETPWNAM 1
#cmakedefine HAVE_INT16_T 1
#cmakedefine HAVE_INT32_T 1
#cmakedefine HAVE_INTTYPES_H 1
#cmakedefine HAVE_MKSTEMP 1
#cmakedefine HAVE_NDIR_H 1
#cmakedefine HAVE_POPEN 1
#cmakedefine HAVE_PWD_H 1
#cmakedefine HAVE_SELECT 1
#cmakedefine HAVE_STDINT_H 1
#cmakedefine HAVE_STRDUP 1
#cmakedefine HAVE_SYSCONF 1
#cmakedefine HAVE_SYSTEM 1
#cmakedefine HAVE_SYS_DIR_H 1
#cmakedefine HAVE_SYS_NDIR_H 1
#cmakedefine HAVE_SYS_STAT_H 1
#cmakedefine HAVE_SYS_TIME_H 1
#cmakedefine HAVE_SYS_TYPES_H 1
#cmakedefine HAVE_SYS_WAIT_H 1
#cmakedefine HAVE_SYS_SELECT_H 1
#cmakedefine HAVE_TEMPNAM 1
#cmakedefine HAVE_TMPNAM 1
#cmakedefine HAVE_UNISTD_H 1
#cmakedefine HAVE_VFORK 1
#cmakedefine HAVE_VFORK_H 1
#cmakedefine HAVE_WORKING_FORK 1
#cmakedefine HAVE_WORKING_VFORK 1
#cmakedefine HAVE_ZLIB 1
#cmakedefine HAVE_STRINGS_H 1
#cmakedefine HAVE_SRAND48 1
#cmakedefine HAVE_DRAND48 1
#cmakedefine HAVE_SLEEP 1
#cmakedefine HAVE_TEMPNAM 1
#cmakedefine HAVE_TMPNAM 1
#cmakedefine HAVE_UNISTD_H 1
#cmakedefine HAVE_VFORK 1
#cmakedefine HAVE_VFORK_H 1
#cmakedefine HAVE_WORKING_FORK 1
#cmakedefine HAVE_WORKING_VFORK 1
#cmakedefine HAVE_ZLIB 1
#cmakedefine HAVE_STRINGS_H 1
#cmakedefine HAVE_SRAND48 1
#cmakedefine HAVE_DRAND48 1
#cmakedefine HAVE_SLEEP 1
#cmakedefine HAVE_CLOCK_GETTIME 1
#cmakedefine HAVE_GETTIMEOFDAY 1
#cmakedefine HAVE_RINT 1
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