[ci] move js and json linter biome to pre-commit

[StrikerRUS]

Support: node hooks work without any system-level dependencies. It has been tested on linux, windows, and macOS and may work under cygwin.

https://pre-commit.com/#node

I decided to check that and made the following actions config:

name: pre-commit

on:
  pull_request:
  push:
    branches: ci/test-pre-commit

jobs:
  pre-commit:
    runs-on: ${{ matrix.os }}
    strategy:
      fail-fast: false
      matrix:
        include:
          - os: ubuntu-latest
          - os: macos-latest
          - os: windows-latest
    steps:
      - name: Prepare git
        if: startsWith(matrix.os, 'windows')
        run: git config --global core.autocrlf false
      - uses: actions/checkout@v3
      - uses: actions/setup-python@v3
      - uses: pre-commit/[email protected]

Works fine on Windows, macOS and Ubuntu: https://github.com/microsoft/LightGBM/actions/runs/18497387840

[StrikerRUS]

From here

https://github.com/github/gitignore/blob/fc6ce5da28a8c3480cc8a5acad050449f72a9261/Python.gitignore#L170-L173

[StrikerRUS]

That property has been deprecated and isn't part of the editor config anymore
editorconfig/editorconfig#387

biomejs/biome#7733 (comment)

[StrikerRUS]

New config is a result of the following v2 release: https://biomejs.dev/guides/upgrade-to-biome-v2/

[StrikerRUS]

I guess it's needed because pre-commit creates another one root config on the fly.

biome ci.................................................................Failed
- hook id: biome-ci
- exit code: 1

 configuration ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━

  ✖ Found a nested root configuration, but there's already a root configuration.
  
  ℹ The other configuration was found in .
  
  ℹ Use the migration command from the root of the project to update the configuration.
  
  $ biome migrate --write
  

configuration ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━

  ✖ Biome exited because the configuration resulted in errors. Please fix them.