fix(ribodetector): Update tests to handle topic-based version collection

Remove versions snapshot from tests since ribodetector now uses topics
syntax for version collection. The versions output is no longer available
as a standard channel output.

🤖 Generated with [Claude Code](https://claude.com/claude-code)

Co-Authored-By: Claude <[email protected]>

Author: pinin4fjords

modules/nf-core/ribodetector/tests/main.nf.test

@@ -29,8 +29,8 @@ nextflow_process {
                 { assert process.success },
                 { assert process.out.fastq },
                 { assert process.out.log },
-                { assert path(process.out.log[0][1]).getText().contains("Writing output non-rRNA sequences") },
-                { assert snapshot(process.out.versions).match() }
+                { assert path(process.out.log[0][1]).getText().contains("Writing output non-rRNA sequences") }
+                // Note: versions collected via topic, not snapshotted
             )
         }
 
@@ -58,7 +58,11 @@ nextflow_process {
         then {
             assertAll(
                 { assert process.success },
-                { assert snapshot(process.out).match() }
+                { assert snapshot(
+                    process.out.fastq,
+                    process.out.log
+                    // Note: versions collected via topic, not available in stub mode
+                ).match() }
             )
         }
 

modules/nf-core/ribodetector/tests/main.nf.test.snap

@@ -1,73 +1,32 @@
 {
-    "ribodetector - rnaseq PE input": {
-        "content": [
-            [
-                "versions.yml:md5,00f7751920c7b6a3899b1142cf69783f"
-            ]
-        ],
-        "meta": {
-            "nf-test": "0.9.2",
-            "nextflow": "25.10.0"
-        },
-        "timestamp": "2025-11-29T18:00:40.740454"
-    },
     "ribodetector - stub rnaseq PE input": {
         "content": [
-            {
-                "0": [
-                    [
-                        {
-                            "id": "test",
-                            "single_end": false
-                        },
-                        [
-                            "test.nonrna.1.fastq.gz:md5,68b329da9893e34099c7d8ad5cb9c940",
-                            "test.nonrna.2.fastq.gz:md5,68b329da9893e34099c7d8ad5cb9c940"
-                        ]
-                    ]
-                ],
-                "1": [
-                    [
-                        {
-                            "id": "test",
-                            "single_end": false
-                        },
-                        "test.log:md5,d41d8cd98f00b204e9800998ecf8427e"
-                    ]
-                ],
-                "2": [
-                    "versions.yml:md5,00f7751920c7b6a3899b1142cf69783f"
-                ],
-                "fastq": [
-                    [
-                        {
-                            "id": "test",
-                            "single_end": false
-                        },
-                        [
-                            "test.nonrna.1.fastq.gz:md5,68b329da9893e34099c7d8ad5cb9c940",
-                            "test.nonrna.2.fastq.gz:md5,68b329da9893e34099c7d8ad5cb9c940"
-                        ]
-                    ]
-                ],
-                "log": [
+            [
+                [
+                    {
+                        "id": "test",
+                        "single_end": false
+                    },
                     [
-                        {
-                            "id": "test",
-                            "single_end": false
-                        },
-                        "test.log:md5,d41d8cd98f00b204e9800998ecf8427e"
+                        "test.nonrna.1.fastq.gz:md5,68b329da9893e34099c7d8ad5cb9c940",
+                        "test.nonrna.2.fastq.gz:md5,68b329da9893e34099c7d8ad5cb9c940"
                     ]
-                ],
-                "versions": [
-                    "versions.yml:md5,00f7751920c7b6a3899b1142cf69783f"
                 ]
-            }
+            ],
+            [
+                [
+                    {
+                        "id": "test",
+                        "single_end": false
+                    },
+                    "test.log:md5,d41d8cd98f00b204e9800998ecf8427e"
+                ]
+            ]
         ],
         "meta": {
             "nf-test": "0.9.2",
             "nextflow": "25.10.0"
         },
         "timestamp": "2025-11-29T18:00:56.023264"
     }
-}
+}