@nf-core is a community effort to collect a curated set of analysis pipelines built using Nextflow (@nextflow-io).
Here's how to get started:
Pipeline for testing drug response prediction models in a statistically and biologically sound way.
A pipeline to run and systematically evaluate Multiple Sequence Alignment (MSA) methods.
nf-core/phyloplace is a bioinformatics best-practice analysis pipeline that performs phylogenetic placement with EPA-NG.
Differential abundance analysis for feature/ observation matrices from platforms such as RNA-seq
A pipeline for the analysis of CRISPR edited data. It allows the evaluation of the quality of gene editing experiments using targeted next generation sequencing (NGS) data (`targeted`) as well as the discovery of important genes from knock-out or activation CRISPR-Cas9 screens using CRISPR pooled DNA (`screening`).
