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Pull requests: nf-core/modules

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Pull requests list

Upgrade stranger to v0.10.2 size/s
#11274 opened Apr 23, 2026 by alkc Contributor • Draft
1 of 17 tasks
Add module: Percolator
#11273 opened Apr 23, 2026 by julianu Contributor Loading…
12 of 17 tasks
1
Improve mirtop stats script with GFF check
#11262 opened Apr 22, 2026 by d-jch Contributor Loading…
RFC: document GPU container variants in meta.yml (ribodetector) size/s
#11259 opened Apr 22, 2026 by pinin4fjords Member • Draft
Update modules and swap to topics tidk/explore, tidk/plot, tidk/search, and fasta_explore_search_plot_tidk
#11254 opened Apr 21, 2026 by FernandoDuarteF Contributor Loading…
6 of 17 tasks
1
1
bots add new module for svdss/index size/m
#11253 opened Apr 21, 2026 by vagkaratzas Contributor Loading…
13 of 17 tasks
1
9
fix seqkit sample for paired-end reads size/s
#11249 opened Apr 21, 2026 by bounlu Contributor Loading…
1
Make rundbcan/easysybstract synteny_pdf as optional, version topics upgrade, bump version size/l
#11242 opened Apr 20, 2026 by jfy133 Member • Draft
17 tasks
Centrifuger quant
#11234 opened Apr 20, 2026 by haris18s Contributor Loading…
1 of 7 tasks
15
Migrate missing nf-core/differentialabundance modules to Seqera containers
#11232 opened Apr 20, 2026 by atrigila Contributor Loading…
8 tasks done
2
add quilt2 sbwf
#11223 opened Apr 19, 2026 by atrigila Contributor Loading…
17 tasks
5
feat: add dorado/aligner module
#11222 opened Apr 18, 2026 by sahuno • Draft
11 tasks done
Remove DE user params
#11221 opened Apr 17, 2026 by antoniasaracco Contributor • Draft
6
feat: BCFTOOLS_PLUGINVCF2TABLE
#11219 opened Apr 17, 2026 by emmcauley Contributor Loading…
17 tasks
1
Update Parabricks modules to use Parabricks version 4.7
#11217 opened Apr 17, 2026 by gburnett-nvidia Contributor Loading…
17 tasks
2
@gburnett-nvidia
14
Add stats command option to filtermutectcalls size/xs
#11216 opened Apr 17, 2026 by lucacozzuto Contributor Loading…
2 of 17 tasks
1
add carveme_carve size/m
#11211 opened Apr 17, 2026 by vagkaratzas Contributor Loading…
17 tasks
12
bio2zarr umbrella of modules, deprecating old format ones size/l
#11207 opened Apr 16, 2026 by vagkaratzas Contributor Loading…
7 of 17 tasks
5
Add module: vcf2circos Ready for Review
#11206 opened Apr 16, 2026 by tetedange13 Contributor Loading…
11 of 13 tasks
1
12
seqkit: bump version size/xs
#11202 opened Apr 16, 2026 by bounlu Contributor Loading…
1
Add humann WIP Work in progress
#11201 opened Apr 16, 2026 by vinisalazar Contributor Loading…
14 of 17 tasks
2
14
Fix name mangling in GUNZIP module
#11200 opened Apr 15, 2026 by ivirshup Loading…
4 of 17 tasks
1
8
Bwa input tuple update ch fasta fai Ready for Review
#11199 opened Apr 15, 2026 by Kevin-Brockers Contributor Loading…
2 tasks done
2
@Kevin-Brockers
21
fix: update ribodetector GPU container to modern PyTorch/CUDA size/s
#11197 opened Apr 15, 2026 by pinin4fjords Member • Draft
feat: parsnp module new module Adding a new module
#11196 opened Apr 15, 2026 by emmcauley Contributor Loading…
7 of 17 tasks
1
22
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