Collect intervallist channel output and propagate to genotyping step #1872
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| tuple val(meta), path("$prefix") , optional:true, emit: genomicsdb | ||
| tuple val(meta), path("$updated_db") , optional:true, emit: updatedb | ||
| tuple val(meta), path("*.interval_list"), optional:true, emit: intervallist | ||
| tuple val(meta), path("$interval_list"), optional:true, emit: intervallist |
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heads up: these changes should be made in nf-core/modules and then imported here so others benefit from the work too :)
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I have opened an issue (nf-core/modules#8393) and PR to nf-core modules (nf-core/modules#8394).
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hey! Do you need to update the module, aka run nf-core modules update for the genotypegvcf module? |
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Not sure I follow. As in for this PR? |
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Yes :) but that can only be done after the PR is merged in the modules repo! |
3 participants
Addresses #1870
PR checklist
nf-core pipelines lint).nextflow run . -profile test,docker --outdir <OUTDIR>).nextflow run . -profile debug,test,docker --outdir <OUTDIR>).docs/usage.mdis updated.docs/output.mdis updated.CHANGELOG.mdis updated.README.mdis updated (including new tool citations and authors/contributors).