Feat/coassembly submission#66
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Co-authored-by: Copilot <copilot@github.com>
Co-authored-by: Copilot <copilot@github.com>
Co-authored-by: Copilot <copilot@github.com>
Co-authored-by: Copilot <copilot@github.com>
Co-authored-by: Copilot <copilot@github.com>
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Resolves #61
Allows submission of co assemblies, but not bins generated from co-assemblies.
Tests pass, some additional refactoring can be done as well as improvement of created test assertions.
What is not implemented:
Also a fix required for coverage calculation in ASSEMBLYSUBMIT:
For co assembly CoverM output file has multiple columns, so
row[1]is incorrect.In addition it would be good to update the README with detailed explanation on how co assembly submission works.
PR checklist
nf-core pipelines lint).nextflow run . -profile test,docker --outdir <OUTDIR>).nextflow run . -profile debug,test,docker --outdir <OUTDIR>).docs/usage.mdis updated.docs/output.mdis updated.CHANGELOG.mdis updated.README.mdis updated (including new tool citations and authors/contributors).