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Co-authored-by: Matthias Hörtenhuber <mashehu@users.noreply.github.com>
Co-authored-by: Matthias Hörtenhuber <mashehu@users.noreply.github.com>
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Warning Newer version of the nf-core template is available. Your pipeline is using an old version of the nf-core template: 3.5.1. For more documentation on how to update your pipeline, please see the nf-core documentation and Synchronisation documentation. |
Fixes for `visium_hd` on S3
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Hi @mashehu, we found and fixed a bug when running nf-core/sopa on clouds, e.g., AWS. Everything is green on my side, and I think I addressed all your comments from your last review - should we merge this PR (and also this test-datasets PR)? |
mashehu
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Mar 19, 2026
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Looking good now, I think! |
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Do not merge! This is a PR of dev compared to the TEMPLATE branch for whole-pipeline reviewing purposes. Changes should be made to dev and this PR should not be merged! The actual release PR is at