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@openworm

OpenWorm

An open-source project dedicated to creating a virtual C. elegans nematode in a computer.
README.md

OpenWorm

An open-source project dedicated to creating a virtual C. elegans nematode in a computer.

An overview of the core repositories in the project, along with the current status of automated testing, can be found here.

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  1. OpenWorm OpenWorm Public

    Repository for the main Dockerfile with the OpenWorm software stack and project-wide issues

    Python 2.7k 215

  2. openworm.github.io openworm.github.io Public

    OpenWorm main website

    HTML 25 35

  3. org.geppetto org.geppetto Public

    Geppetto is an open-source platform to build web-based applications to visualize and simulate neuroscience data and models.

    Python 212 50

  4. c302 c302 Public

    The c302 framework for generating multiscale network models of C. elegans

    Python 115 22

  5. ChannelWorm2 ChannelWorm2 Public

    Tools and curated datasets to build quantitative models of C. elegans ion channels

    Jupyter Notebook 11 2

Repositories

Showing 10 of 102 repositories
  • wormpose Public Forked from iteal/wormpose

    WormPose: Image synthesis and convolutional networks for pose estimation in C. elegans

    openworm/wormpose’s past year of commit activity
    Python 0 BSD-3-Clause 17 0 0 Updated Feb 21, 2025
  • c302 Public

    The c302 framework for generating multiscale network models of C. elegans

    openworm/c302’s past year of commit activity
    Python 115 22 10 (1 issue needs help) 1 Updated Feb 21, 2025
  • CE_locomotion Public Forked from edizquierdo/CE_locomotion

    Neuromechanical model of locomotion in C. elegans, originally developed by Eduardo Izquerdo, Erick Olivares and Randall Beer

    openworm/CE_locomotion’s past year of commit activity
    C++ 1 3 7 1 Updated Feb 21, 2025
  • org.geppetto.datasources Public
    openworm/org.geppetto.datasources’s past year of commit activity
    Java 2 2 0 5 Updated Feb 20, 2025
  • NicolettiEtAl2024_MN_IN Public Forked from ModelDBRepository/2017403

    C.elegans motor and interneurons (Nicoletti at al. 2024)

    openworm/NicolettiEtAl2024_MN_IN’s past year of commit activity
    Python 0 3 3 3 Updated Feb 20, 2025
  • geppetto-client Public

    The web client of a Geppetto application

    openworm/geppetto-client’s past year of commit activity
    JavaScript 5 2 70 27 Updated Feb 19, 2025
  • org.geppetto.frontend Public

    Geppetto Java frontend bundle

    openworm/org.geppetto.frontend’s past year of commit activity
    Java 29 25 2 4 Updated Feb 13, 2025
  • OpenWorm Public

    Repository for the main Dockerfile with the OpenWorm software stack and project-wide issues

    openworm/OpenWorm’s past year of commit activity
    Python 2,738 MIT 215 41 4 Updated Feb 7, 2025
  • ConnectomeToolbox Public

    Information on published connectomics data related to C. elegans

    openworm/ConnectomeToolbox’s past year of commit activity
    Python 2 3 3 1 Updated Feb 5, 2025
  • sibernetic Public

    This is a C++/OpenCL implementation of the PCISPH algorithm supplemented with a set of biomechanics related features applied to C. elegans locomotion

    openworm/sibernetic’s past year of commit activity
    C 370 104 30 7 Updated Jan 27, 2025
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