Search results

SciUnit test to reproduce additional muscle patch clamp data in the muscle model

Status: Open.

#64 In openworm/muscle_model;

· slarson opened on Feb 19, 2017

Add to the readme to create a well cited and reasoned case for the ideal set of ion channels that should be in the muscle model

Status: Open.

#63 In openworm/muscle_model;

· slarson opened on Feb 14, 2017

Create tests to catch performance regressions in specific functions

testing

Status: Open.

#51 In openworm/muscle_model;

· gsarma opened on Aug 9, 2015

· 

Adapt validation framework from PyOpenWorm and ChannelWorm to the muscle model

Check for performance regressions in testing suite

testing

Status: Open.

#50 In openworm/muscle_model;

· gsarma opened on Aug 9, 2015

· 

Adapt validation framework from PyOpenWorm and ChannelWorm to the muscle model

Integrate the test in the test suite being run on TravisCI

testing

Status: Open.

#44 In openworm/muscle_model;

· travs opened on Jun 21, 2015

· 

Create unit test on the full muscle model that reproduces Figure 1A from Liu, Hollopeter, & Jorgensen 2009

Turn the error-generating script into a SciUnit test

sciunit

testing

Status: Open.

#43 In openworm/muscle_model;

· travs opened on Jun 21, 2015

· 

Create unit test on the full muscle model that reproduces Figure 1A from Liu, Hollopeter, & Jorgensen 2009

Write a script that generates an overlaid image of the simulated and digitized data

Status: Open.

#42 In openworm/muscle_model;

· travs opened on Jun 21, 2015

· 

Create unit test on the full muscle model that reproduces Figure 1A from Liu, Hollopeter, & Jorgensen 2009

Write a script that takes the digitized figure and the simulation output and calculates the error/difference

Status: Open.

#41 In openworm/muscle_model;

· travs opened on Jun 21, 2015

· 

Create unit test on the full muscle model that reproduces Figure 1A from Liu, Hollopeter, & Jorgensen 2009

Document muscle_model testing framework

testing

Status: Open.

#39 In openworm/muscle_model;

· travs opened on Jun 21, 2015

· 

Adapt validation framework from PyOpenWorm and ChannelWorm to the muscle model

Write SciUnit validation tests for muscle_model

sciunit

testing

Status: Open.

#38 In openworm/muscle_model;

· travs opened on Jun 21, 2015

· 

Adapt validation framework from PyOpenWorm and ChannelWorm to the muscle model

Write doctests for muscle_model

ready

Status: Open.

#36 In openworm/muscle_model;

· travs opened on Jun 21, 2015

· 

Adapt validation framework from PyOpenWorm and ChannelWorm to the muscle model

Draft workflow outline for validation tests

sciunit

testing

Status: Open.

#33 In openworm/muscle_model;

· travs opened on May 7, 2015

· 

Adapt validation framework from PyOpenWorm and ChannelWorm to the muscle model