samtools htsjdk General · Discussions · GitHub

Is there any way to query from a zipped(*.vcf.gz) and indexed(*.vcf.gx.tbi) file with chr,position,ref and alt("chr2:9452897_AT_T)")
Q&A amirul99

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Looking for interested parties to help maintain VCF/BCF codebase

tfenne started Jul 13, 2026 in General

2
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HTSJDK 5.0 forthcoming soon - looking for early adopters

tfenne started Apr 26, 2026 in General

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Who still considers themselves a maintainer of HTSJDK?

tfenne started Mar 30, 2026 in General · Closed

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How does DuplicateSetIterator choose the same representative in the duplicate sets for a read and its mate?

limwz01 started Nov 26, 2024 in General

7
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VCF validation using HTSJDK

makenzi-nzau started Feb 16, 2024 in General

1
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Creating a bai index from a CRAM file

BeatWolf started Oct 22, 2023 in General

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VariantContext subcontexting- possible on alleles?

makenzi-nzau started Jan 24, 2023 in General

2