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samtools htsjdk Q-a Discussions

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Is there any way to query from a zipped(*.vcf.gz) and indexed(*.vcf.gx.tbi) file with chr,position,ref and alt("chr2:9452897_AT_T)")
Q&A amirul99

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samtools.github.io/htsjdk

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Interchangably use IndexedFastaSequenceFile and BlockCompressedIndexedFastaSequenceFile

dariober asked Mar 25, 2025 in Q&A · Answered

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I want to use rsId in Java to query VCF files. How can I accomplish this?

Opticalproperty asked May 29, 2023 in Q&A · Unanswered

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Reading VCF file features using custom 'Allele' subclass

makenzi-nzau asked Feb 16, 2023 in Q&A · Answered

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Is there any way to query from a zipped(*.vcf.gz) and indexed(*.vcf.gx.tbi) file with chr,position,ref and alt("chr2:9452897_AT_T)")

amirul99 asked Oct 6, 2022 in Q&A · Answered

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