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47 Open 1,916 Closed
47 Open 1,916 Closed
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Issues list

Reproducibility across runs?
#2102 opened Mar 25, 2025 by chrisamiller
Does not support scan modes: 9 (DIA) from a .d file
#2101 opened Mar 25, 2025 by BenitezG
@fcyu
1
Issues when running Non-specific-HLA-TMT workflow
#2100 opened Mar 25, 2025 by JingAnyaSun
@fcyu
8
The reason for the difference between Intermediate file and psm.tsv peptide sequence
#2098 opened Mar 23, 2025 by JWJW1
@fcyu
3
Dramatic mass recalibration required
#2094 opened Mar 20, 2025 by dtabb73
@fcyu
6
No skyline document created
#2089 opened Mar 17, 2025 by egulyas
@fcyu
DIA_SpecLib_Quant No name for protein identification Bis
#2060 opened Mar 1, 2025 by Angrist75
@fcyu
2
Unique Peptides only for Quant in FragPipe
#2051 opened Feb 25, 2025 by JohnSuberu
@fcyu
3
report2.tsv file generated instead of a report.tsv file which caused an error
#2050 opened Feb 25, 2025 by Bondada20
@fcyu
5
Exclude peptide terminus from variable modification feature request
#1989 opened Jan 20, 2025 by marhartl
@fcyu
2
Bioconda package for fragpipe last version?
#1896 opened Nov 23, 2024 by rolivella
2
Isobaric label annotation
#1895 opened Nov 22, 2024 by cutleraging
@fcyu
2
DIA_spec_diaPASEF DIANN output pg file did not contain protein name
#1831 opened Oct 16, 2024 by singhsk2622
@fcyu
2
Process 'DIA-NN: Propagate information' finished, exit code: 1
#1815 opened Oct 4, 2024 by S-Watanabe0123
@fcyu
12
Protein coverage calculation
#1810 opened Oct 2, 2024 by apsteinberg
@fcyu @anesvi
5
Combined unique peptides column is missing in combined_proteins.tsv
#1808 opened Oct 2, 2024 by SamueldelaCamaraFuentes
@fcyu
PTM Prophet error crashes run
#1781 opened Sep 13, 2024 by S-Watanabe0123
@fcyu
14
How to set a modification not C-term?
#1763 opened Aug 31, 2024 by a995752924
@fcyu
3
Can we get support for crosslinking MS?
#1738 opened Aug 20, 2024 by bluemooninvestor
Questions about searching the Pierce iRT peptides.
#1673 opened Jul 15, 2024 by vindr20
@fcyu @yangkl96
18
LFQ-phospho - sequence
#1649 opened Jun 26, 2024 by ghost
@fcyu
2
Summary table-like output for FragPipe enhancement FragPipe
#1641 opened Jun 21, 2024 by carlosg-czbiohub
@fcyu
1
SaintExpress Analysis after GPF-DIA? feature request FragPipe
#1634 opened Jun 16, 2024 by TTCooper-PhD
@fcyu
1
FragPipe v22 + DIA-NN 1.9 - Failed to generate skyline document FragPipe
#1630 opened Jun 14, 2024 by emhumphries
@fcyu
3
Missing Razor peptide count in combined combined_protein.tsv IonQuant
#1592 opened May 24, 2024 by HYTang69
@fcyu
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