nf-core
Change the repository type filter
All
Repositories list
154 repositories
- A pipeline for processing Molecular Cartography data from Resolve Bioscience (combinatorial FISH)
- Config files used to define parameters specific to compute environments at different Institutions
- Call and score variants from WGS/WES of rare disease patients.
- Pipeline for testing drug response prediction models in a statistically and biologically sound way.
- nf-core/phyloplace is a bioinformatics best-practice analysis pipeline that performs phylogenetic placement with EPA-NG.
- A pipeline for the analysis of CRISPR edited data. It allows the evaluation of the quality of gene editing experiments using targeted next generation sequencing (NGS) data (`targeted`) as well as the discovery of important genes from knock-out or activation CRISPR-Cas9 screens using CRISPR pooled DNA (`screening`).
eager
PublicA fully reproducible and state-of-the-art ancient DNA analysis pipeline- Protein 3D structure prediction pipeline
- Compare the quality of multiple genomes, along with their annotations.
variantbenchmarking
Publicphaseimpute
PublicA bioinformatics pipeline to phase and impute genetic datafetchngs
Publicmhcquant
Publicatacseq
Publicdrop
Publicgenomeassembler
Public- Assembly and annotation of metatranscriptomic or metagenomic data for prokaryotic, eukaryotic and viruses.
- Single-cell RNA-Seq pipeline for barcode-based protocols such as 10x, DropSeq or SmartSeq, offering a variety of aligners and empty-droplet detection
demultiplex
PublicDemultiplexing pipeline for sequencing dataproteinfamilies
PublicGeneration and update of protein families